Hb_009581_040

Information

Type -
Description -
Location Contig9581: 31444-45190
Sequence    

Annotation

kegg
ID tcc:TCM_029304
description Leucine-rich repeat transmembrane protein kinase
nr
ID KJB69980.1
description hypothetical protein B456_011G052100 [Gossypium raimondii]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID A0A0D2VIH5
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G052100 PE=4 SV=1
Gene Ontology
ID GO:0005488
description leucine-rich repeat transmembrane protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63607: 38765-39358 , PASA_asmbl_63608: 39363-40511 , PASA_asmbl_63610: 40695-41297 , PASA_asmbl_63611: 41298-44067 , PASA_asmbl_63612: 44198-66639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009581_040 0.0 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
2 Hb_003430_020 0.0839609381 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
3 Hb_008406_020 0.0882268368 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
4 Hb_074312_020 0.089465722 - - cytochrome P450, putative [Ricinus communis]
5 Hb_001862_060 0.0895389575 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
6 Hb_000255_020 0.0966106765 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
7 Hb_002276_100 0.1001411621 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
8 Hb_008226_120 0.1010722689 - - ATP binding protein, putative [Ricinus communis]
9 Hb_003439_020 0.1025692045 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
10 Hb_084127_010 0.1030556061 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_000280_110 0.104555015 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_000657_030 0.1047958671 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_001894_040 0.1051266721 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
14 Hb_003376_200 0.1079022926 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000579_220 0.1089953696 - - transcription factor, putative [Ricinus communis]
16 Hb_005183_200 0.1186641095 - - EG964 [Manihot glaziovii]
17 Hb_134017_010 0.1192226065 - - kinase, putative [Ricinus communis]
18 Hb_000856_240 0.119412871 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_046101_010 0.1212293608 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
20 Hb_038777_010 0.1218282252 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_009581_040 Hb_009581_040 Hb_003430_020 Hb_003430_020 Hb_009581_040--Hb_003430_020 Hb_008406_020 Hb_008406_020 Hb_009581_040--Hb_008406_020 Hb_074312_020 Hb_074312_020 Hb_009581_040--Hb_074312_020 Hb_001862_060 Hb_001862_060 Hb_009581_040--Hb_001862_060 Hb_000255_020 Hb_000255_020 Hb_009581_040--Hb_000255_020 Hb_002276_100 Hb_002276_100 Hb_009581_040--Hb_002276_100 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_012807_060 Hb_012807_060 Hb_003430_020--Hb_012807_060 Hb_000907_120 Hb_000907_120 Hb_008406_020--Hb_000907_120 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010 Hb_003439_020 Hb_003439_020 Hb_074312_020--Hb_003439_020 Hb_074312_020--Hb_001862_060 Hb_046101_010 Hb_046101_010 Hb_074312_020--Hb_046101_010 Hb_074312_020--Hb_002276_100 Hb_074312_020--Hb_134017_010 Hb_001369_070 Hb_001369_070 Hb_074312_020--Hb_001369_070 Hb_001862_060--Hb_003439_020 Hb_038777_010 Hb_038777_010 Hb_001862_060--Hb_038777_010 Hb_001862_060--Hb_134017_010 Hb_001894_040 Hb_001894_040 Hb_001862_060--Hb_001894_040 Hb_000856_240 Hb_000856_240 Hb_000255_020--Hb_000856_240 Hb_000255_020--Hb_003439_020 Hb_001838_010 Hb_001838_010 Hb_000255_020--Hb_001838_010 Hb_000255_020--Hb_134017_010 Hb_000255_020--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_000280_110 Hb_000280_110 Hb_002276_100--Hb_000280_110 Hb_002276_100--Hb_046101_010 Hb_002276_100--Hb_038777_010 Hb_002276_100--Hb_001369_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133292 11.1376 1.59048 3.8948 0.065253 0.0929687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435194 0.0342428 0 7.51093 1.88334

CAGE analysis