Hb_000907_120

Information

Type transcription factor
Description TF Family: G2-like
Location Contig907: 155408-162577
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03900g
description hypothetical protein
nr
ID XP_011000707.1
description PREDICTED: transcription repressor KAN1-like [Populus euphratica]
swissprot
ID Q93WJ9
description Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1
trembl
ID U5FWI5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62058: 155688-162561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000907_120 0.0 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
2 Hb_000152_250 0.0773380606 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
3 Hb_008406_020 0.0958992298 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
4 Hb_000521_210 0.0988044859 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_006020_010 0.1016975299 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
6 Hb_006364_020 0.1023662981 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
7 Hb_000111_190 0.1029222401 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
8 Hb_002276_100 0.1077574064 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
9 Hb_131662_010 0.1089360093 - - Insulin-degrading enzyme, putative [Ricinus communis]
10 Hb_005000_200 0.109339698 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
11 Hb_003439_090 0.1099603233 - - kinase, putative [Ricinus communis]
12 Hb_065230_010 0.1115309975 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
13 Hb_084127_010 0.1148751188 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001823_070 0.1207120275 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
15 Hb_000586_100 0.1223228773 - - conserved hypothetical protein [Ricinus communis]
16 Hb_074312_020 0.1227033607 - - cytochrome P450, putative [Ricinus communis]
17 Hb_003430_020 0.1229444545 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
18 Hb_134017_010 0.1243346829 - - kinase, putative [Ricinus communis]
19 Hb_000101_140 0.1245748556 - - amino acid transporter, putative [Ricinus communis]
20 Hb_015473_010 0.1247362822 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]

Gene co-expression network

sample Hb_000907_120 Hb_000907_120 Hb_000152_250 Hb_000152_250 Hb_000907_120--Hb_000152_250 Hb_008406_020 Hb_008406_020 Hb_000907_120--Hb_008406_020 Hb_000521_210 Hb_000521_210 Hb_000907_120--Hb_000521_210 Hb_006020_010 Hb_006020_010 Hb_000907_120--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000907_120--Hb_006364_020 Hb_000111_190 Hb_000111_190 Hb_000907_120--Hb_000111_190 Hb_015473_010 Hb_015473_010 Hb_000152_250--Hb_015473_010 Hb_002735_010 Hb_002735_010 Hb_000152_250--Hb_002735_010 Hb_003439_090 Hb_003439_090 Hb_000152_250--Hb_003439_090 Hb_000152_250--Hb_000521_210 Hb_000152_250--Hb_006020_010 Hb_009581_040 Hb_009581_040 Hb_008406_020--Hb_009581_040 Hb_002276_100 Hb_002276_100 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_003430_020 Hb_003430_020 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010 Hb_000101_140 Hb_000101_140 Hb_000521_210--Hb_000101_140 Hb_084127_010 Hb_084127_010 Hb_000521_210--Hb_084127_010 Hb_000856_240 Hb_000856_240 Hb_000521_210--Hb_000856_240 Hb_000579_220 Hb_000579_220 Hb_000521_210--Hb_000579_220 Hb_000586_100 Hb_000586_100 Hb_006020_010--Hb_000586_100 Hb_006020_010--Hb_003439_090 Hb_000407_080 Hb_000407_080 Hb_006020_010--Hb_000407_080 Hb_006020_010--Hb_006364_020 Hb_006364_020--Hb_000111_190 Hb_001823_070 Hb_001823_070 Hb_006364_020--Hb_001823_070 Hb_006364_020--Hb_000586_100 Hb_130967_010 Hb_130967_010 Hb_006364_020--Hb_130967_010 Hb_006364_020--Hb_003439_090 Hb_000111_190--Hb_001823_070 Hb_003579_040 Hb_003579_040 Hb_000111_190--Hb_003579_040 Hb_000111_190--Hb_006020_010 Hb_005784_020 Hb_005784_020 Hb_000111_190--Hb_005784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184149 14.7416 2.61652 8.50023 0.0980075 0.0539699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.033741 0 0 8.31467 1.38424

CAGE analysis