Hb_000111_190

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig111: 213067-214966
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06580g
description POPTRDRAFT_178438; hypothetical protein
nr
ID XP_012068677.1
description PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067KZW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03385: 213382-213504 , PASA_asmbl_03386: 213605-213790 , PASA_asmbl_03387: 213894-214677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_190 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
2 Hb_006364_020 0.060233593 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
3 Hb_001823_070 0.1000399226 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
4 Hb_000907_120 0.1029222401 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
5 Hb_003579_040 0.1098598406 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
6 Hb_006020_010 0.113220991 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
7 Hb_005784_020 0.1216044822 - - Protein MKS1, putative [Ricinus communis]
8 Hb_000586_100 0.1221855875 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001856_160 0.1223319306 - - conserved hypothetical protein [Ricinus communis]
10 Hb_189034_010 0.1250580965 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_131662_010 0.1255318443 - - Insulin-degrading enzyme, putative [Ricinus communis]
12 Hb_183209_020 0.1262193283 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
13 Hb_130967_010 0.1263400345 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_000137_030 0.1263587774 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
15 Hb_050898_010 0.129646193 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_002276_100 0.1300104026 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
17 Hb_000152_250 0.1314119133 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
18 Hb_000847_050 0.1327209303 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
19 Hb_000497_100 0.1330218237 - - respiratory burst oxidase D [Manihot esculenta]
20 Hb_003376_300 0.136057158 - - Aquaporin PIP2.2, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_190 Hb_000111_190 Hb_006364_020 Hb_006364_020 Hb_000111_190--Hb_006364_020 Hb_001823_070 Hb_001823_070 Hb_000111_190--Hb_001823_070 Hb_000907_120 Hb_000907_120 Hb_000111_190--Hb_000907_120 Hb_003579_040 Hb_003579_040 Hb_000111_190--Hb_003579_040 Hb_006020_010 Hb_006020_010 Hb_000111_190--Hb_006020_010 Hb_005784_020 Hb_005784_020 Hb_000111_190--Hb_005784_020 Hb_006364_020--Hb_001823_070 Hb_000586_100 Hb_000586_100 Hb_006364_020--Hb_000586_100 Hb_130967_010 Hb_130967_010 Hb_006364_020--Hb_130967_010 Hb_006364_020--Hb_000907_120 Hb_003439_090 Hb_003439_090 Hb_006364_020--Hb_003439_090 Hb_126466_010 Hb_126466_010 Hb_001823_070--Hb_126466_010 Hb_002477_080 Hb_002477_080 Hb_001823_070--Hb_002477_080 Hb_000152_250 Hb_000152_250 Hb_001823_070--Hb_000152_250 Hb_001823_070--Hb_130967_010 Hb_000907_120--Hb_000152_250 Hb_008406_020 Hb_008406_020 Hb_000907_120--Hb_008406_020 Hb_000521_210 Hb_000521_210 Hb_000907_120--Hb_000521_210 Hb_000907_120--Hb_006020_010 Hb_003025_150 Hb_003025_150 Hb_003579_040--Hb_003025_150 Hb_002324_040 Hb_002324_040 Hb_003579_040--Hb_002324_040 Hb_012727_010 Hb_012727_010 Hb_003579_040--Hb_012727_010 Hb_000914_110 Hb_000914_110 Hb_003579_040--Hb_000914_110 Hb_004544_090 Hb_004544_090 Hb_003579_040--Hb_004544_090 Hb_006020_010--Hb_000586_100 Hb_006020_010--Hb_003439_090 Hb_000407_080 Hb_000407_080 Hb_006020_010--Hb_000407_080 Hb_006020_010--Hb_000152_250 Hb_006020_010--Hb_006364_020 Hb_008092_020 Hb_008092_020 Hb_005784_020--Hb_008092_020 Hb_002276_100 Hb_002276_100 Hb_005784_020--Hb_002276_100 Hb_000028_460 Hb_000028_460 Hb_005784_020--Hb_000028_460 Hb_000976_340 Hb_000976_340 Hb_005784_020--Hb_000976_340 Hb_005784_020--Hb_004544_090 Hb_000497_100 Hb_000497_100 Hb_005784_020--Hb_000497_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276588 20.6702 5.12097 19.7955 0.334184 0.157392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.3446 3.54219

CAGE analysis