Hb_006364_020

Information

Type -
Description -
Location Contig6364: 46424-50407
Sequence    

Annotation

kegg
ID rcu:RCOM_0339270
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012079496.1
description PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
swissprot
ID O49545
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067KAV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12604 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like serine threonine-protein kinase bam1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51964: 46556-50384
cDNA
(Sanger)
(ID:Location)		 025_I18.ab1: 49575-50355 , 049_G14.ab1: 49596-50355

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006364_020 0.0 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
2 Hb_000111_190 0.060233593 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
3 Hb_001823_070 0.0784222724 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
4 Hb_000586_100 0.0859300009 - - conserved hypothetical protein [Ricinus communis]
5 Hb_130967_010 0.089113626 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000907_120 0.1023662981 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
7 Hb_003439_090 0.1057507697 - - kinase, putative [Ricinus communis]
8 Hb_006020_010 0.1079052661 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
9 Hb_000152_250 0.1144293781 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
10 Hb_134017_010 0.1192666715 - - kinase, putative [Ricinus communis]
11 Hb_003430_020 0.1207785391 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
12 Hb_008406_020 0.1221235806 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
13 Hb_002276_100 0.1252024099 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
14 Hb_001856_160 0.1255700683 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003439_020 0.1290553684 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
16 Hb_000028_460 0.1317619949 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
17 Hb_000020_030 0.1321342956 - - protein binding protein, putative [Ricinus communis]
18 Hb_003376_200 0.1334268891 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_015473_010 0.1334704973 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
20 Hb_000497_100 0.1337130818 - - respiratory burst oxidase D [Manihot esculenta]

Gene co-expression network

sample Hb_006364_020 Hb_006364_020 Hb_000111_190 Hb_000111_190 Hb_006364_020--Hb_000111_190 Hb_001823_070 Hb_001823_070 Hb_006364_020--Hb_001823_070 Hb_000586_100 Hb_000586_100 Hb_006364_020--Hb_000586_100 Hb_130967_010 Hb_130967_010 Hb_006364_020--Hb_130967_010 Hb_000907_120 Hb_000907_120 Hb_006364_020--Hb_000907_120 Hb_003439_090 Hb_003439_090 Hb_006364_020--Hb_003439_090 Hb_000111_190--Hb_001823_070 Hb_000111_190--Hb_000907_120 Hb_003579_040 Hb_003579_040 Hb_000111_190--Hb_003579_040 Hb_006020_010 Hb_006020_010 Hb_000111_190--Hb_006020_010 Hb_005784_020 Hb_005784_020 Hb_000111_190--Hb_005784_020 Hb_126466_010 Hb_126466_010 Hb_001823_070--Hb_126466_010 Hb_002477_080 Hb_002477_080 Hb_001823_070--Hb_002477_080 Hb_000152_250 Hb_000152_250 Hb_001823_070--Hb_000152_250 Hb_001823_070--Hb_130967_010 Hb_013914_020 Hb_013914_020 Hb_000586_100--Hb_013914_020 Hb_000586_100--Hb_003439_090 Hb_000407_080 Hb_000407_080 Hb_000586_100--Hb_000407_080 Hb_000586_100--Hb_006020_010 Hb_003052_120 Hb_003052_120 Hb_000586_100--Hb_003052_120 Hb_134017_010 Hb_134017_010 Hb_130967_010--Hb_134017_010 Hb_003788_010 Hb_003788_010 Hb_130967_010--Hb_003788_010 Hb_130967_010--Hb_000586_100 Hb_130967_010--Hb_003439_090 Hb_002970_070 Hb_002970_070 Hb_130967_010--Hb_002970_070 Hb_000907_120--Hb_000152_250 Hb_008406_020 Hb_008406_020 Hb_000907_120--Hb_008406_020 Hb_000521_210 Hb_000521_210 Hb_000907_120--Hb_000521_210 Hb_000907_120--Hb_006020_010 Hb_003439_090--Hb_013914_020 Hb_003439_090--Hb_134017_010 Hb_000045_180 Hb_000045_180 Hb_003439_090--Hb_000045_180 Hb_003430_020 Hb_003430_020 Hb_003439_090--Hb_003430_020 Hb_003439_090--Hb_000407_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.540264 49.2222 8.42527 43.2056 0.55076 0.305085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0196568 0.0188422 40.3077 9.35399

CAGE analysis