Hb_013914_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig13914: 43217-47161
Sequence    

Annotation

kegg
ID cic:CICLE_v10023392mg
description hypothetical protein
nr
ID XP_012080879.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A067K6D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16251 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10715: 45615-102126 , PASA_asmbl_10716: 45628-102202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013914_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_000407_080 0.0565502778 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
3 Hb_000586_100 0.0667340478 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003439_090 0.0692009194 - - kinase, putative [Ricinus communis]
5 Hb_000045_180 0.0878854334 - - aquaporin PIP1 [Hevea brasiliensis]
6 Hb_017866_020 0.0918300427 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
7 Hb_003052_120 0.0919115623 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
8 Hb_009581_050 0.0925353338 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
9 Hb_000077_460 0.0934456859 - - -
10 Hb_134017_010 0.1005795713 - - kinase, putative [Ricinus communis]
11 Hb_003430_020 0.1052506668 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
12 Hb_002007_140 0.1069773797 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
13 Hb_006020_010 0.1109107613 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
14 Hb_008406_020 0.1196259536 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
15 Hb_003376_200 0.1216815478 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_003807_020 0.1217806543 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
17 Hb_012807_060 0.1218265774 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_028207_030 0.1306541499 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
19 Hb_000335_050 0.1316300978 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
20 Hb_094637_010 0.1319923845 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]

Gene co-expression network

sample Hb_013914_020 Hb_013914_020 Hb_000407_080 Hb_000407_080 Hb_013914_020--Hb_000407_080 Hb_000586_100 Hb_000586_100 Hb_013914_020--Hb_000586_100 Hb_003439_090 Hb_003439_090 Hb_013914_020--Hb_003439_090 Hb_000045_180 Hb_000045_180 Hb_013914_020--Hb_000045_180 Hb_017866_020 Hb_017866_020 Hb_013914_020--Hb_017866_020 Hb_003052_120 Hb_003052_120 Hb_013914_020--Hb_003052_120 Hb_009581_050 Hb_009581_050 Hb_000407_080--Hb_009581_050 Hb_000407_080--Hb_000586_100 Hb_134017_010 Hb_134017_010 Hb_000407_080--Hb_134017_010 Hb_000407_080--Hb_003439_090 Hb_003807_020 Hb_003807_020 Hb_000407_080--Hb_003807_020 Hb_000586_100--Hb_003439_090 Hb_006020_010 Hb_006020_010 Hb_000586_100--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000586_100--Hb_006364_020 Hb_000586_100--Hb_003052_120 Hb_003439_090--Hb_134017_010 Hb_003439_090--Hb_000045_180 Hb_003430_020 Hb_003430_020 Hb_003439_090--Hb_003430_020 Hb_000077_460 Hb_000077_460 Hb_000045_180--Hb_000077_460 Hb_000045_180--Hb_017866_020 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_002007_140 Hb_002007_140 Hb_000045_180--Hb_002007_140 Hb_017866_020--Hb_000077_460 Hb_002003_020 Hb_002003_020 Hb_017866_020--Hb_002003_020 Hb_017866_020--Hb_002007_140 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_012807_060 Hb_012807_060 Hb_003052_120--Hb_012807_060 Hb_003052_120--Hb_009581_050 Hb_003052_120--Hb_000407_080 Hb_002551_090 Hb_002551_090 Hb_003052_120--Hb_002551_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0972165 19.7794 2.76962 11.8446 0.124022 0.120684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 21.1256 1.21709

CAGE analysis