Hb_001283_010

Information

Type transcription factor
Description TF Family: LOB
Location Contig1283: 26836-27854
Sequence    

Annotation

kegg
ID vvi:100251929
description LOB domain-containing protein 15
nr
ID BAR45569.1
description LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
swissprot
ID Q9AT61
description LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2
trembl
ID D7T4G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02380 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lob domain-containing protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001283_010 0.0 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
2 Hb_000077_460 0.0913219446 - - -
3 Hb_004136_050 0.0943049055 - - -
4 Hb_031954_010 0.0949853152 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_017866_020 0.1068016701 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
6 Hb_002003_020 0.1079508694 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
7 Hb_004341_010 0.1112816147 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
8 Hb_000365_290 0.111554135 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
9 Hb_003556_060 0.1222986884 - - -
10 Hb_028207_030 0.1233542241 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
11 Hb_002762_070 0.1300807724 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
12 Hb_005663_050 0.132620051 - - amino acid transporter, putative [Ricinus communis]
13 Hb_001227_020 0.1357318896 - - -
14 Hb_001638_110 0.1375069536 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000935_070 0.1409224402 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_000057_010 0.1445391058 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
17 Hb_022998_010 0.1463351572 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_126077_020 0.1468663397 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
19 Hb_000472_030 0.1480641466 - - -
20 Hb_007850_040 0.1481293432 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001283_010 Hb_001283_010 Hb_000077_460 Hb_000077_460 Hb_001283_010--Hb_000077_460 Hb_004136_050 Hb_004136_050 Hb_001283_010--Hb_004136_050 Hb_031954_010 Hb_031954_010 Hb_001283_010--Hb_031954_010 Hb_017866_020 Hb_017866_020 Hb_001283_010--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_001283_010--Hb_002003_020 Hb_004341_010 Hb_004341_010 Hb_001283_010--Hb_004341_010 Hb_028207_030 Hb_028207_030 Hb_000077_460--Hb_028207_030 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_000077_460--Hb_002003_020 Hb_001863_460 Hb_001863_460 Hb_004136_050--Hb_001863_460 Hb_004136_050--Hb_002003_020 Hb_004136_050--Hb_017866_020 Hb_005663_050 Hb_005663_050 Hb_004136_050--Hb_005663_050 Hb_000057_010 Hb_000057_010 Hb_004136_050--Hb_000057_010 Hb_031954_010--Hb_004341_010 Hb_002762_070 Hb_002762_070 Hb_031954_010--Hb_002762_070 Hb_031954_010--Hb_028207_030 Hb_031954_010--Hb_000077_460 Hb_004837_170 Hb_004837_170 Hb_031954_010--Hb_004837_170 Hb_017866_020--Hb_002003_020 Hb_017866_020--Hb_013914_020 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_004341_010--Hb_004837_170 Hb_004341_010--Hb_002762_070 Hb_004341_010--Hb_000077_460 Hb_004341_010--Hb_028207_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0299647 1.32928 0.0704232 0.760394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.73515 0

CAGE analysis