Hb_005663_050

Information

Type -
Description -
Location Contig5663: 76710-79249
Sequence    

Annotation

kegg
ID rcu:RCOM_1600220
description amino acid transporter, putative
nr
ID XP_002510637.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID B9R8J4
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_1600220 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005663_050 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_003119_070 0.1172200052 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
3 Hb_085327_010 0.1266317592 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
4 Hb_002003_020 0.1275942321 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
5 Hb_004136_050 0.1312078936 - - -
6 Hb_002671_110 0.1319041573 - - PREDICTED: remorin-like [Jatropha curcas]
7 Hb_001283_010 0.132620051 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
8 Hb_000057_010 0.1353367239 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
9 Hb_005218_070 0.1368047858 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
10 Hb_000334_250 0.1403214931 - - Polygalacturonase precursor, putative [Ricinus communis]
11 Hb_001157_150 0.1404475359 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
12 Hb_017866_020 0.1457508479 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
13 Hb_000649_030 0.1475680469 - - scab resistance family protein [Populus trichocarpa]
14 Hb_009515_010 0.1488429491 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
15 Hb_001638_110 0.1492529289 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007163_020 0.1503245657 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_005228_170 0.1510188276 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_002843_010 0.1546985971 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
19 Hb_002204_030 0.1567121943 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
20 Hb_019229_020 0.1590438161 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005663_050 Hb_005663_050 Hb_003119_070 Hb_003119_070 Hb_005663_050--Hb_003119_070 Hb_085327_010 Hb_085327_010 Hb_005663_050--Hb_085327_010 Hb_002003_020 Hb_002003_020 Hb_005663_050--Hb_002003_020 Hb_004136_050 Hb_004136_050 Hb_005663_050--Hb_004136_050 Hb_002671_110 Hb_002671_110 Hb_005663_050--Hb_002671_110 Hb_001283_010 Hb_001283_010 Hb_005663_050--Hb_001283_010 Hb_003119_070--Hb_002003_020 Hb_001838_050 Hb_001838_050 Hb_003119_070--Hb_001838_050 Hb_003031_030 Hb_003031_030 Hb_003119_070--Hb_003031_030 Hb_017866_020 Hb_017866_020 Hb_003119_070--Hb_017866_020 Hb_000616_050 Hb_000616_050 Hb_003119_070--Hb_000616_050 Hb_004041_080 Hb_004041_080 Hb_085327_010--Hb_004041_080 Hb_000334_250 Hb_000334_250 Hb_085327_010--Hb_000334_250 Hb_001454_340 Hb_001454_340 Hb_085327_010--Hb_001454_340 Hb_009515_010 Hb_009515_010 Hb_085327_010--Hb_009515_010 Hb_033006_040 Hb_033006_040 Hb_085327_010--Hb_033006_040 Hb_002003_020--Hb_017866_020 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_002003_020--Hb_004136_050 Hb_000077_460 Hb_000077_460 Hb_002003_020--Hb_000077_460 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_002003_020--Hb_001283_010 Hb_004136_050--Hb_001283_010 Hb_001863_460 Hb_001863_460 Hb_004136_050--Hb_001863_460 Hb_004136_050--Hb_017866_020 Hb_000057_010 Hb_000057_010 Hb_004136_050--Hb_000057_010 Hb_005228_170 Hb_005228_170 Hb_002671_110--Hb_005228_170 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_005218_070 Hb_005218_070 Hb_002671_110--Hb_005218_070 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040 Hb_001283_010--Hb_000077_460 Hb_031954_010 Hb_031954_010 Hb_001283_010--Hb_031954_010 Hb_001283_010--Hb_017866_020 Hb_004341_010 Hb_004341_010 Hb_001283_010--Hb_004341_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0121218 0.742513 0.037023 0.329275 0 0.0238724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0217048 0 1.3237 0

CAGE analysis