Hb_000334_250

Information

Type -
Description -
Location Contig334: 214919-217518
Sequence    

Annotation

kegg
ID rcu:RCOM_0968450
description Polygalacturonase precursor, putative (EC:3.2.1.15)
nr
ID XP_002517823.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID Q9SFB7
description Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2
trembl
ID B9RVQ4
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_0968450 PE=3 SV=1
Gene Ontology
ID GO:0004650
description polygalacturonase qrt2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000334_250 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_009515_010 0.034971651 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
3 Hb_002204_030 0.0530341772 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
4 Hb_000302_060 0.0749345015 - - unnamed protein product [Vitis vinifera]
5 Hb_005218_070 0.0933256832 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
6 Hb_000472_030 0.0995895622 - - -
7 Hb_005228_170 0.107848895 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_000608_080 0.1109824125 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
9 Hb_002622_020 0.1134769359 - - -
10 Hb_000236_360 0.1148836389 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
11 Hb_000141_230 0.1184922254 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
12 Hb_001157_150 0.120782508 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
13 Hb_000951_030 0.1214343158 - - kinase, putative [Ricinus communis]
14 Hb_002081_040 0.1292240675 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
15 Hb_002556_020 0.1305236906 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
16 Hb_002671_110 0.1329487582 - - PREDICTED: remorin-like [Jatropha curcas]
17 Hb_012762_070 0.1334690989 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
18 Hb_000057_010 0.1345494763 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
19 Hb_002475_020 0.1345815225 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
20 Hb_002003_020 0.1355240195 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000334_250 Hb_000334_250 Hb_009515_010 Hb_009515_010 Hb_000334_250--Hb_009515_010 Hb_002204_030 Hb_002204_030 Hb_000334_250--Hb_002204_030 Hb_000302_060 Hb_000302_060 Hb_000334_250--Hb_000302_060 Hb_005218_070 Hb_005218_070 Hb_000334_250--Hb_005218_070 Hb_000472_030 Hb_000472_030 Hb_000334_250--Hb_000472_030 Hb_005228_170 Hb_005228_170 Hb_000334_250--Hb_005228_170 Hb_009515_010--Hb_002204_030 Hb_009515_010--Hb_000302_060 Hb_009515_010--Hb_005218_070 Hb_000608_080 Hb_000608_080 Hb_009515_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_009515_010--Hb_000141_230 Hb_002204_030--Hb_000302_060 Hb_000951_030 Hb_000951_030 Hb_002204_030--Hb_000951_030 Hb_002204_030--Hb_005218_070 Hb_002556_020 Hb_002556_020 Hb_002204_030--Hb_002556_020 Hb_000302_060--Hb_000141_230 Hb_000302_060--Hb_002556_020 Hb_000302_060--Hb_000951_030 Hb_002475_020 Hb_002475_020 Hb_000302_060--Hb_002475_020 Hb_005218_070--Hb_005228_170 Hb_005218_070--Hb_000302_060 Hb_005218_070--Hb_002475_020 Hb_002671_110 Hb_002671_110 Hb_005218_070--Hb_002671_110 Hb_002622_020 Hb_002622_020 Hb_000472_030--Hb_002622_020 Hb_012762_070 Hb_012762_070 Hb_000472_030--Hb_012762_070 Hb_000472_030--Hb_000608_080 Hb_005056_030 Hb_005056_030 Hb_000472_030--Hb_005056_030 Hb_000472_030--Hb_009515_010 Hb_002081_040 Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_002671_110 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_005228_170--Hb_002204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0290143 0 0.0128895 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0569989 0

CAGE analysis