Hb_161393_010

Information

Type -
Description -
Location Contig161393: 338-676
Sequence    

Annotation

kegg
ID rcu:RCOM_0801630
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002516533.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS14
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0801630 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161393_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002081_040 0.048685584 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
3 Hb_001621_140 0.0635646512 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
4 Hb_041769_010 0.0655872088 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_006446_060 0.0750812572 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
6 Hb_005653_020 0.076424978 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
7 Hb_002553_120 0.0811333207 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
8 Hb_005228_170 0.0918559996 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_059162_010 0.100084835 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005218_070 0.1014480403 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
11 Hb_002671_110 0.1046116555 - - PREDICTED: remorin-like [Jatropha curcas]
12 Hb_000101_050 0.1060972839 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_000951_030 0.1063276096 - - kinase, putative [Ricinus communis]
14 Hb_001173_050 0.1074318337 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
15 Hb_000539_080 0.1128922562 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
16 Hb_001693_020 0.1132227414 - - zinc finger protein, putative [Ricinus communis]
17 Hb_047163_010 0.1132698565 - - PREDICTED: periaxin-like [Populus euphratica]
18 Hb_002475_020 0.1146685389 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
19 Hb_004185_040 0.1150862522 - - polygalacturonase, putative [Ricinus communis]
20 Hb_000758_030 0.1161055198 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_161393_010 Hb_161393_010 Hb_002081_040 Hb_002081_040 Hb_161393_010--Hb_002081_040 Hb_001621_140 Hb_001621_140 Hb_161393_010--Hb_001621_140 Hb_041769_010 Hb_041769_010 Hb_161393_010--Hb_041769_010 Hb_006446_060 Hb_006446_060 Hb_161393_010--Hb_006446_060 Hb_005653_020 Hb_005653_020 Hb_161393_010--Hb_005653_020 Hb_002553_120 Hb_002553_120 Hb_161393_010--Hb_002553_120 Hb_005228_170 Hb_005228_170 Hb_002081_040--Hb_005228_170 Hb_002081_040--Hb_001621_140 Hb_002081_040--Hb_005653_020 Hb_005218_070 Hb_005218_070 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_001621_140--Hb_006446_060 Hb_001621_140--Hb_005653_020 Hb_001621_140--Hb_041769_010 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070 Hb_041769_010--Hb_006446_060 Hb_000101_050 Hb_000101_050 Hb_041769_010--Hb_000101_050 Hb_059162_010 Hb_059162_010 Hb_041769_010--Hb_059162_010 Hb_004185_040 Hb_004185_040 Hb_041769_010--Hb_004185_040 Hb_006446_060--Hb_000101_050 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070 Hb_006446_060--Hb_005653_020 Hb_005653_020--Hb_002553_120 Hb_005653_020--Hb_041769_010 Hb_002553_120--Hb_006446_060 Hb_000684_020 Hb_000684_020 Hb_002553_120--Hb_000684_020 Hb_002553_120--Hb_002081_040 Hb_002553_120--Hb_001621_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.18946 0.309741 1.98308 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 22.1415 0.362635

CAGE analysis