Hb_005993_070

Information

Type -
Description -
Location Contig5993: 66011-67159
Sequence    

Annotation

kegg
ID rcu:RCOM_0646560
description lipid binding protein, putative
nr
ID XP_002524759.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID Q9ZQI8
description Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1
trembl
ID B9SFJ0
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646560 PE=4 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005993_070 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_005731_080 0.048788019 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_006446_060 0.0736220754 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
4 Hb_001902_180 0.0757504605 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
5 Hb_002743_030 0.0784601069 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
6 Hb_000101_050 0.0870225769 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
7 Hb_125876_010 0.0912451655 - - unnamed protein product [Vitis vinifera]
8 Hb_011819_030 0.0919957548 - - cytochrome P450, putative [Ricinus communis]
9 Hb_005846_010 0.0963188446 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
10 Hb_002603_020 0.0964574312 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
11 Hb_001621_140 0.0974574166 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
12 Hb_011628_030 0.0977239606 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006478_190 0.1009965641 - - lipid binding protein, putative [Ricinus communis]
14 Hb_041769_010 0.1023196237 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_002311_050 0.1032423598 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
16 Hb_005436_020 0.1050933601 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_004109_300 0.1059219663 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
18 Hb_047163_010 0.1059969718 - - PREDICTED: periaxin-like [Populus euphratica]
19 Hb_000365_300 0.1068105301 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
20 Hb_005550_070 0.107805195 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]

Gene co-expression network

sample Hb_005993_070 Hb_005993_070 Hb_005731_080 Hb_005731_080 Hb_005993_070--Hb_005731_080 Hb_006446_060 Hb_006446_060 Hb_005993_070--Hb_006446_060 Hb_001902_180 Hb_001902_180 Hb_005993_070--Hb_001902_180 Hb_002743_030 Hb_002743_030 Hb_005993_070--Hb_002743_030 Hb_000101_050 Hb_000101_050 Hb_005993_070--Hb_000101_050 Hb_125876_010 Hb_125876_010 Hb_005993_070--Hb_125876_010 Hb_005731_080--Hb_002743_030 Hb_012019_030 Hb_012019_030 Hb_005731_080--Hb_012019_030 Hb_006478_190 Hb_006478_190 Hb_005731_080--Hb_006478_190 Hb_004195_040 Hb_004195_040 Hb_005731_080--Hb_004195_040 Hb_000365_300 Hb_000365_300 Hb_005731_080--Hb_000365_300 Hb_006446_060--Hb_000101_050 Hb_041769_010 Hb_041769_010 Hb_006446_060--Hb_041769_010 Hb_001621_140 Hb_001621_140 Hb_006446_060--Hb_001621_140 Hb_161393_010 Hb_161393_010 Hb_006446_060--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_006446_060--Hb_005653_020 Hb_001902_180--Hb_006446_060 Hb_001902_180--Hb_000101_050 Hb_009012_020 Hb_009012_020 Hb_001902_180--Hb_009012_020 Hb_001902_180--Hb_005731_080 Hb_000411_060 Hb_000411_060 Hb_001902_180--Hb_000411_060 Hb_002743_030--Hb_125876_010 Hb_003074_070 Hb_003074_070 Hb_002743_030--Hb_003074_070 Hb_002603_020 Hb_002603_020 Hb_002743_030--Hb_002603_020 Hb_047163_010 Hb_047163_010 Hb_002743_030--Hb_047163_010 Hb_004109_300 Hb_004109_300 Hb_002743_030--Hb_004109_300 Hb_000101_050--Hb_041769_010 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_005846_010 Hb_005846_010 Hb_125876_010--Hb_005846_010 Hb_156949_010 Hb_156949_010 Hb_125876_010--Hb_156949_010 Hb_125876_010--Hb_002603_020 Hb_125876_010--Hb_004109_300 Hb_011628_030 Hb_011628_030 Hb_125876_010--Hb_011628_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.1722 0.068375 0.10546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.82536 0.107675

CAGE analysis