Hb_005846_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig5846: 16130-17401
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07590g
description POPTRDRAFT_207391; hypothetical protein
nr
ID XP_011031021.1
description PREDICTED: myb-related protein 308-like [Populus euphratica]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID B9H4T1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07590g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor myb39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005846_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
2 Hb_125876_010 0.0469670488 - - unnamed protein product [Vitis vinifera]
3 Hb_156949_010 0.0599628194 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_002603_020 0.0638423393 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
5 Hb_005550_070 0.0678597933 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
6 Hb_001168_080 0.0713228038 - - kinase, putative [Ricinus communis]
7 Hb_011628_030 0.0787539669 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004918_040 0.0801540082 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003735_010 0.0802604657 - - -
10 Hb_008397_020 0.0802693187 - - polyprotein [Oryza australiensis]
11 Hb_001719_030 0.0803185579 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_083377_010 0.0803693846 - - unnamed protein product [Vitis vinifera]
13 Hb_005656_090 0.0808786459 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
14 Hb_010139_010 0.08102025 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
15 Hb_002621_020 0.0823565786 - - -
16 Hb_002743_030 0.0828840818 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
17 Hb_000703_310 0.083207809 - - -
18 Hb_007441_030 0.0840114637 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
19 Hb_000163_310 0.0857258226 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
20 Hb_007658_020 0.0857787277 - - Beta-amyrin synthase [Glycine soja]

Gene co-expression network

sample Hb_005846_010 Hb_005846_010 Hb_125876_010 Hb_125876_010 Hb_005846_010--Hb_125876_010 Hb_156949_010 Hb_156949_010 Hb_005846_010--Hb_156949_010 Hb_002603_020 Hb_002603_020 Hb_005846_010--Hb_002603_020 Hb_005550_070 Hb_005550_070 Hb_005846_010--Hb_005550_070 Hb_001168_080 Hb_001168_080 Hb_005846_010--Hb_001168_080 Hb_011628_030 Hb_011628_030 Hb_005846_010--Hb_011628_030 Hb_002743_030 Hb_002743_030 Hb_125876_010--Hb_002743_030 Hb_125876_010--Hb_156949_010 Hb_125876_010--Hb_002603_020 Hb_004109_300 Hb_004109_300 Hb_125876_010--Hb_004109_300 Hb_125876_010--Hb_011628_030 Hb_156949_010--Hb_002603_020 Hb_181092_010 Hb_181092_010 Hb_156949_010--Hb_181092_010 Hb_004918_040 Hb_004918_040 Hb_156949_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_156949_010--Hb_003735_010 Hb_000163_310 Hb_000163_310 Hb_002603_020--Hb_000163_310 Hb_007441_030 Hb_007441_030 Hb_002603_020--Hb_007441_030 Hb_000703_310 Hb_000703_310 Hb_002603_020--Hb_000703_310 Hb_002621_020 Hb_002621_020 Hb_002603_020--Hb_002621_020 Hb_005550_070--Hb_011628_030 Hb_005550_070--Hb_125876_010 Hb_047163_010 Hb_047163_010 Hb_005550_070--Hb_047163_010 Hb_005550_070--Hb_004109_300 Hb_005550_070--Hb_156949_010 Hb_000905_030 Hb_000905_030 Hb_001168_080--Hb_000905_030 Hb_151236_010 Hb_151236_010 Hb_001168_080--Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_001168_080--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_001168_080--Hb_010839_020 Hb_004195_050 Hb_004195_050 Hb_001168_080--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_001168_080--Hb_007382_060 Hb_011628_030--Hb_047163_010 Hb_059162_010 Hb_059162_010 Hb_011628_030--Hb_059162_010 Hb_004931_060 Hb_004931_060 Hb_011628_030--Hb_004931_060 Hb_011628_030--Hb_002743_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.868814 0.0157248 0.0154076 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.5375 0

CAGE analysis