Hb_004109_300

Information

Type -
Description -
Location Contig4109: 286417-291530
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21800g
description POPTRDRAFT_555274; hypothetical protein
nr
ID XP_002304892.1
description hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
swissprot
ID Q3E9B5
description Protein NRT1/ PTR FAMILY 7.1 OS=Arabidopsis thaliana GN=NPF7.1 PE=2 SV=1
trembl
ID B9GYL3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21800g PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_300 0.0 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
2 Hb_125876_010 0.0635263999 - - unnamed protein product [Vitis vinifera]
3 Hb_002743_030 0.0739309963 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
4 Hb_047163_010 0.0760418478 - - PREDICTED: periaxin-like [Populus euphratica]
5 Hb_000236_360 0.0767961088 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
6 Hb_156949_010 0.08668732 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
7 Hb_003074_070 0.0905435029 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_002603_020 0.0920058893 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
9 Hb_005653_020 0.0957117048 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
10 Hb_011628_030 0.0959062845 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005550_070 0.0960578392 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
12 Hb_005846_010 0.1008377639 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
13 Hb_011819_030 0.1026318884 - - cytochrome P450, putative [Ricinus communis]
14 Hb_059162_010 0.1051242401 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_005993_070 0.1059219663 - - lipid binding protein, putative [Ricinus communis]
16 Hb_000380_040 0.106245039 - - bel1 homeotic protein, putative [Ricinus communis]
17 Hb_181092_010 0.1082191312 - - unnamed protein product [Vitis vinifera]
18 Hb_006446_060 0.1111869638 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
19 Hb_001621_140 0.1122400937 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
20 Hb_005731_080 0.1135892419 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004109_300 Hb_004109_300 Hb_125876_010 Hb_125876_010 Hb_004109_300--Hb_125876_010 Hb_002743_030 Hb_002743_030 Hb_004109_300--Hb_002743_030 Hb_047163_010 Hb_047163_010 Hb_004109_300--Hb_047163_010 Hb_000236_360 Hb_000236_360 Hb_004109_300--Hb_000236_360 Hb_156949_010 Hb_156949_010 Hb_004109_300--Hb_156949_010 Hb_003074_070 Hb_003074_070 Hb_004109_300--Hb_003074_070 Hb_005846_010 Hb_005846_010 Hb_125876_010--Hb_005846_010 Hb_125876_010--Hb_002743_030 Hb_125876_010--Hb_156949_010 Hb_002603_020 Hb_002603_020 Hb_125876_010--Hb_002603_020 Hb_011628_030 Hb_011628_030 Hb_125876_010--Hb_011628_030 Hb_002743_030--Hb_003074_070 Hb_002743_030--Hb_002603_020 Hb_002743_030--Hb_047163_010 Hb_005731_080 Hb_005731_080 Hb_002743_030--Hb_005731_080 Hb_047163_010--Hb_011628_030 Hb_059162_010 Hb_059162_010 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_004931_060 Hb_004931_060 Hb_047163_010--Hb_004931_060 Hb_000380_040 Hb_000380_040 Hb_000236_360--Hb_000380_040 Hb_001157_150 Hb_001157_150 Hb_000236_360--Hb_001157_150 Hb_000236_360--Hb_047163_010 Hb_000236_360--Hb_125876_010 Hb_181092_010 Hb_181092_010 Hb_000236_360--Hb_181092_010 Hb_156949_010--Hb_002603_020 Hb_156949_010--Hb_005846_010 Hb_156949_010--Hb_181092_010 Hb_004918_040 Hb_004918_040 Hb_156949_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_156949_010--Hb_003735_010 Hb_122574_020 Hb_122574_020 Hb_003074_070--Hb_122574_020 Hb_004195_040 Hb_004195_040 Hb_003074_070--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_003074_070--Hb_012019_030 Hb_000951_030 Hb_000951_030 Hb_003074_070--Hb_000951_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.53582 0.0419961 0.820279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0208777 0.0492828 0 16.8445 0.0347866

CAGE analysis