Hb_047163_010

Information

Type -
Description -
Location Contig47163: 1282-1626
Sequence    

Annotation

kegg
ID pop:POPTR_0007s03370g
description hypothetical protein
nr
ID XP_011023100.1
description PREDICTED: periaxin-like [Populus euphratica]
swissprot
ID P9WJD3
description ESX-1 secretion-associated protein EspE OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=espE PE=1 SV=1
trembl
ID U5G3Q7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03370g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047163_010 0.0 - - PREDICTED: periaxin-like [Populus euphratica]
2 Hb_011628_030 0.0438575124 - - conserved hypothetical protein [Ricinus communis]
3 Hb_059162_010 0.0442182393 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_125876_010 0.0685402778 - - unnamed protein product [Vitis vinifera]
5 Hb_002743_030 0.0689624997 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
6 Hb_004109_300 0.0760418478 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
7 Hb_004931_060 0.0846440066 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
8 Hb_006446_060 0.0925416382 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
9 Hb_041769_010 0.0933187994 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_003074_070 0.0933728326 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_005550_070 0.0945803378 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
12 Hb_005653_020 0.098078369 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
13 Hb_005731_080 0.0994881132 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_005846_010 0.1005177663 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
15 Hb_000236_360 0.1008322738 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
16 Hb_005993_070 0.1059969718 - - lipid binding protein, putative [Ricinus communis]
17 Hb_004185_040 0.1065069993 - - polygalacturonase, putative [Ricinus communis]
18 Hb_004195_040 0.1080680878 - - salicylic acid methyl transferase [Capsicum annuum]
19 Hb_000101_050 0.1083899687 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
20 Hb_001621_140 0.1093250033 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_047163_010 Hb_047163_010 Hb_011628_030 Hb_011628_030 Hb_047163_010--Hb_011628_030 Hb_059162_010 Hb_059162_010 Hb_047163_010--Hb_059162_010 Hb_125876_010 Hb_125876_010 Hb_047163_010--Hb_125876_010 Hb_002743_030 Hb_002743_030 Hb_047163_010--Hb_002743_030 Hb_004109_300 Hb_004109_300 Hb_047163_010--Hb_004109_300 Hb_004931_060 Hb_004931_060 Hb_047163_010--Hb_004931_060 Hb_011628_030--Hb_059162_010 Hb_011628_030--Hb_125876_010 Hb_011628_030--Hb_004931_060 Hb_005550_070 Hb_005550_070 Hb_011628_030--Hb_005550_070 Hb_011628_030--Hb_002743_030 Hb_041769_010 Hb_041769_010 Hb_059162_010--Hb_041769_010 Hb_004185_040 Hb_004185_040 Hb_059162_010--Hb_004185_040 Hb_059162_010--Hb_002743_030 Hb_004195_040 Hb_004195_040 Hb_059162_010--Hb_004195_040 Hb_005846_010 Hb_005846_010 Hb_125876_010--Hb_005846_010 Hb_125876_010--Hb_002743_030 Hb_156949_010 Hb_156949_010 Hb_125876_010--Hb_156949_010 Hb_002603_020 Hb_002603_020 Hb_125876_010--Hb_002603_020 Hb_125876_010--Hb_004109_300 Hb_003074_070 Hb_003074_070 Hb_002743_030--Hb_003074_070 Hb_002743_030--Hb_002603_020 Hb_005731_080 Hb_005731_080 Hb_002743_030--Hb_005731_080 Hb_002743_030--Hb_004109_300 Hb_000236_360 Hb_000236_360 Hb_004109_300--Hb_000236_360 Hb_004109_300--Hb_156949_010 Hb_004109_300--Hb_003074_070 Hb_186298_010 Hb_186298_010 Hb_004931_060--Hb_186298_010 Hb_002917_020 Hb_002917_020 Hb_004931_060--Hb_002917_020 Hb_004931_060--Hb_005550_070 Hb_004931_060--Hb_059162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.70091 0.189849 0.53061 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.3928 0

CAGE analysis