Hb_186298_010

Information

Type -
Description -
Location Contig186298: 9973-12596
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ZUE0
description Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0000166
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18320: 10930-11612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186298_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004931_060 0.0857391078 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
3 Hb_126077_020 0.0985128884 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
4 Hb_002917_020 0.1036726407 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
5 Hb_000265_010 0.1165369647 - - amino acid transporter, putative [Ricinus communis]
6 Hb_002716_080 0.1186003854 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
7 Hb_001863_460 0.1211197371 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
8 Hb_022998_010 0.1234848236 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001157_150 0.1251015762 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
10 Hb_002003_020 0.1267274822 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
11 Hb_002400_250 0.1281029544 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_000300_570 0.1283435538 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
13 Hb_012053_030 0.1325145246 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
14 Hb_003086_200 0.1336331891 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_047163_010 0.1337818957 - - PREDICTED: periaxin-like [Populus euphratica]
16 Hb_001596_040 0.1346192248 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
17 Hb_001663_100 0.1366329058 - - -
18 Hb_000616_050 0.1387727337 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
19 Hb_011628_030 0.1389668581 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001953_130 0.1395651444 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]

Gene co-expression network

sample Hb_186298_010 Hb_186298_010 Hb_004931_060 Hb_004931_060 Hb_186298_010--Hb_004931_060 Hb_126077_020 Hb_126077_020 Hb_186298_010--Hb_126077_020 Hb_002917_020 Hb_002917_020 Hb_186298_010--Hb_002917_020 Hb_000265_010 Hb_000265_010 Hb_186298_010--Hb_000265_010 Hb_002716_080 Hb_002716_080 Hb_186298_010--Hb_002716_080 Hb_001863_460 Hb_001863_460 Hb_186298_010--Hb_001863_460 Hb_011628_030 Hb_011628_030 Hb_004931_060--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_004931_060--Hb_047163_010 Hb_004931_060--Hb_002917_020 Hb_005550_070 Hb_005550_070 Hb_004931_060--Hb_005550_070 Hb_059162_010 Hb_059162_010 Hb_004931_060--Hb_059162_010 Hb_034342_010 Hb_034342_010 Hb_126077_020--Hb_034342_010 Hb_003556_060 Hb_003556_060 Hb_126077_020--Hb_003556_060 Hb_022998_010 Hb_022998_010 Hb_126077_020--Hb_022998_010 Hb_001424_080 Hb_001424_080 Hb_126077_020--Hb_001424_080 Hb_001663_100 Hb_001663_100 Hb_126077_020--Hb_001663_100 Hb_002917_020--Hb_005550_070 Hb_002917_020--Hb_011628_030 Hb_002917_020--Hb_047163_010 Hb_001951_090 Hb_001951_090 Hb_002917_020--Hb_001951_090 Hb_000300_570 Hb_000300_570 Hb_000265_010--Hb_000300_570 Hb_003086_200 Hb_003086_200 Hb_000265_010--Hb_003086_200 Hb_012053_030 Hb_012053_030 Hb_000265_010--Hb_012053_030 Hb_002007_230 Hb_002007_230 Hb_000265_010--Hb_002007_230 Hb_012395_070 Hb_012395_070 Hb_000265_010--Hb_012395_070 Hb_001489_030 Hb_001489_030 Hb_000265_010--Hb_001489_030 Hb_002716_080--Hb_126077_020 Hb_002003_020 Hb_002003_020 Hb_002716_080--Hb_002003_020 Hb_002716_080--Hb_003556_060 Hb_002716_080--Hb_022998_010 Hb_000141_220 Hb_000141_220 Hb_002716_080--Hb_000141_220 Hb_004136_050 Hb_004136_050 Hb_001863_460--Hb_004136_050 Hb_001863_460--Hb_126077_020 Hb_001863_460--Hb_002917_020 Hb_002843_010 Hb_002843_010 Hb_001863_460--Hb_002843_010 Hb_001863_460--Hb_004931_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.67936 0.578323 0.981419 0.0179862 0.0157672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.040979 0 0 8.2655 0

CAGE analysis