Hb_000141_220

Information

Type -
Description -
Location Contig141: 290238-290651
Sequence    

Annotation

kegg
ID tcc:TCM_016003
description 14 kDa proline-rich protein DC2.15, putative
nr
ID XP_012475941.1
description PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
swissprot
ID Q9SU34
description pEARLI1-like lipid transfer protein 2 OS=Arabidopsis thaliana GN=At4g12490 PE=2 SV=1
trembl
ID A0A0D2QW64
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G199900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 034_H10.ab1: 290030-290734

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_220 0.0 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
2 Hb_164010_090 0.0976780528 - - cellulose synthase, putative [Ricinus communis]
3 Hb_017866_020 0.1095926773 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
4 Hb_002003_020 0.1156516309 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
5 Hb_000077_460 0.1331566722 - - -
6 Hb_000844_010 0.1362956699 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
7 Hb_000045_180 0.1367989966 - - aquaporin PIP1 [Hevea brasiliensis]
8 Hb_000000_060 0.1373912062 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
9 Hb_003119_070 0.1377063291 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_001104_280 0.1409860513 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
11 Hb_002007_140 0.1412129369 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
12 Hb_002716_080 0.1429707703 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
13 Hb_001838_010 0.1453111146 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
14 Hb_011909_030 0.1494200977 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
15 Hb_135811_060 0.1519680208 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_000265_010 0.1532746719 - - amino acid transporter, putative [Ricinus communis]
17 Hb_000077_470 0.1532763597 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
18 Hb_004136_050 0.1539643048 - - -
19 Hb_000589_180 0.1540592461 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
20 Hb_019229_020 0.1541264722 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000141_220 Hb_000141_220 Hb_164010_090 Hb_164010_090 Hb_000141_220--Hb_164010_090 Hb_017866_020 Hb_017866_020 Hb_000141_220--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_000141_220--Hb_002003_020 Hb_000077_460 Hb_000077_460 Hb_000141_220--Hb_000077_460 Hb_000844_010 Hb_000844_010 Hb_000141_220--Hb_000844_010 Hb_000045_180 Hb_000045_180 Hb_000141_220--Hb_000045_180 Hb_004195_170 Hb_004195_170 Hb_164010_090--Hb_004195_170 Hb_005380_040 Hb_005380_040 Hb_164010_090--Hb_005380_040 Hb_164010_090--Hb_017866_020 Hb_000589_180 Hb_000589_180 Hb_164010_090--Hb_000589_180 Hb_164010_090--Hb_000844_010 Hb_017866_020--Hb_000077_460 Hb_017866_020--Hb_002003_020 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_001283_010 Hb_001283_010 Hb_017866_020--Hb_001283_010 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_004136_050 Hb_004136_050 Hb_002003_020--Hb_004136_050 Hb_002003_020--Hb_000077_460 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_002003_020--Hb_001283_010 Hb_028207_030 Hb_028207_030 Hb_000077_460--Hb_028207_030 Hb_000077_460--Hb_000045_180 Hb_000077_460--Hb_001283_010 Hb_000077_460--Hb_013914_020 Hb_017417_030 Hb_017417_030 Hb_000844_010--Hb_017417_030 Hb_141142_010 Hb_141142_010 Hb_000844_010--Hb_141142_010 Hb_135811_060 Hb_135811_060 Hb_000844_010--Hb_135811_060 Hb_133636_010 Hb_133636_010 Hb_000844_010--Hb_133636_010 Hb_003439_090 Hb_003439_090 Hb_000045_180--Hb_003439_090 Hb_000045_180--Hb_013914_020 Hb_003938_010 Hb_003938_010 Hb_000045_180--Hb_003938_010 Hb_000045_180--Hb_002007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10485 112.913 2.90477 30.6029 2.64751 2.19414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 110.148 4.17071

CAGE analysis