Hb_141142_010

Information

Type -
Description -
Location Contig141142: 1108-2007
Sequence    

Annotation

kegg
ID rcu:RCOM_0906990
description S-locus-specific glycoprotein S13 precursor, putative
nr
ID KDP20849.1
description hypothetical protein JCGZ_21320 [Jatropha curcas]
swissprot
ID P17840
description S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2
trembl
ID A0A067JMV9
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21320 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141142_010 0.0 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
2 Hb_000844_010 0.1523169894 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
3 Hb_003384_070 0.1726285903 - - PREDICTED: methylesterase 17-like [Populus euphratica]
4 Hb_003175_020 0.1847961859 - - homeobox protein knotted-1, putative [Ricinus communis]
5 Hb_025194_010 0.1927622988 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
6 Hb_133636_010 0.1950889741 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
7 Hb_005157_010 0.1960169717 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
8 Hb_011382_050 0.196672461 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
9 Hb_101089_010 0.199591375 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
10 Hb_002553_160 0.2008679528 - - PREDICTED: uncharacterized protein LOC104590935 [Nelumbo nucifera]
11 Hb_001584_010 0.2015879964 - - kelch repeat protein, putative [Ricinus communis]
12 Hb_000803_100 0.2033769477 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
13 Hb_003299_010 0.207243539 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_000189_120 0.2126790392 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
15 Hb_007773_030 0.2240443819 - - -
16 Hb_124302_030 0.2278532356 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
17 Hb_048848_010 0.2282920864 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
18 Hb_006738_060 0.2288674929 - - ATP binding protein, putative [Ricinus communis]
19 Hb_007144_010 0.2295108642 - - -
20 Hb_003525_020 0.2309356042 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_141142_010 Hb_141142_010 Hb_000844_010 Hb_000844_010 Hb_141142_010--Hb_000844_010 Hb_003384_070 Hb_003384_070 Hb_141142_010--Hb_003384_070 Hb_003175_020 Hb_003175_020 Hb_141142_010--Hb_003175_020 Hb_025194_010 Hb_025194_010 Hb_141142_010--Hb_025194_010 Hb_133636_010 Hb_133636_010 Hb_141142_010--Hb_133636_010 Hb_005157_010 Hb_005157_010 Hb_141142_010--Hb_005157_010 Hb_000141_220 Hb_000141_220 Hb_000844_010--Hb_000141_220 Hb_017417_030 Hb_017417_030 Hb_000844_010--Hb_017417_030 Hb_164010_090 Hb_164010_090 Hb_000844_010--Hb_164010_090 Hb_135811_060 Hb_135811_060 Hb_000844_010--Hb_135811_060 Hb_000844_010--Hb_133636_010 Hb_011382_050 Hb_011382_050 Hb_003384_070--Hb_011382_050 Hb_001351_040 Hb_001351_040 Hb_003384_070--Hb_001351_040 Hb_000315_030 Hb_000315_030 Hb_003384_070--Hb_000315_030 Hb_101089_010 Hb_101089_010 Hb_003384_070--Hb_101089_010 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_003175_020--Hb_025194_010 Hb_124302_030 Hb_124302_030 Hb_003175_020--Hb_124302_030 Hb_003175_020--Hb_133636_010 Hb_007144_010 Hb_007144_010 Hb_003175_020--Hb_007144_010 Hb_003175_020--Hb_101089_010 Hb_001269_040 Hb_001269_040 Hb_025194_010--Hb_001269_040 Hb_001338_050 Hb_001338_050 Hb_025194_010--Hb_001338_050 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_025194_010--Hb_007144_010 Hb_003299_010 Hb_003299_010 Hb_133636_010--Hb_003299_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_133636_010--Hb_005157_010 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030 Hb_005157_010--Hb_003299_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_000685_060 Hb_000685_060 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025224 0.379792 0.0200398 0.0877451 0.0709505 0.0222559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.220288 0

CAGE analysis