Hb_001269_040

Information

Type -
Description -
Location Contig1269: 63121-70664
Sequence    

Annotation

kegg
ID rcu:RCOM_0471430
description ATP-binding cassette transporter, putative (EC:3.6.3.28 3.6.3.31)
nr
ID AIU41654.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID A0A097P9Q9
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG40 PE=2 SV=1
Gene Ontology
ID GO:0016020
description atp-binding cassette

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08147: 63128-68492 , PASA_asmbl_08148: 68493-70700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_040 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002686_280 0.1463694621 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_002273_080 0.1646693678 - - geranylgeranyl reductase [Monoraphidium neglectum]
4 Hb_002273_050 0.1775018021 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
5 Hb_012404_040 0.1785531898 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
6 Hb_001338_050 0.1788123297 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
7 Hb_025194_010 0.1796695536 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
8 Hb_010261_010 0.1893475577 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
9 Hb_007144_010 0.191646923 - - -
10 Hb_000215_410 0.2065134716 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
11 Hb_004976_060 0.2066016938 - - -
12 Hb_000538_190 0.2071813312 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
13 Hb_003849_260 0.2094470779 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
14 Hb_003525_020 0.2131453903 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001351_040 0.214044396 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
16 Hb_002609_090 0.2173820446 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_004724_130 0.2181688504 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
18 Hb_002235_240 0.2182968347 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
19 Hb_003633_140 0.2189464658 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
20 Hb_020178_060 0.2193679548 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001269_040 Hb_001269_040 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_025194_010 Hb_025194_010 Hb_001269_040--Hb_025194_010 Hb_002686_280--Hb_002273_050 Hb_002686_280--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_002686_280--Hb_002235_240 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010 Hb_003849_260 Hb_003849_260 Hb_002686_280--Hb_003849_260 Hb_002273_080--Hb_002273_050 Hb_000215_410 Hb_000215_410 Hb_002273_080--Hb_000215_410 Hb_129204_060 Hb_129204_060 Hb_002273_080--Hb_129204_060 Hb_001269_690 Hb_001269_690 Hb_002273_080--Hb_001269_690 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_129204_060 Hb_010261_010 Hb_010261_010 Hb_012404_040--Hb_010261_010 Hb_000640_150 Hb_000640_150 Hb_012404_040--Hb_000640_150 Hb_001351_040 Hb_001351_040 Hb_012404_040--Hb_001351_040 Hb_009848_030 Hb_009848_030 Hb_012404_040--Hb_009848_030 Hb_015388_030 Hb_015388_030 Hb_012404_040--Hb_015388_030 Hb_001338_050--Hb_025194_010 Hb_004976_060 Hb_004976_060 Hb_001338_050--Hb_004976_060 Hb_005157_010 Hb_005157_010 Hb_001338_050--Hb_005157_010 Hb_005841_080 Hb_005841_080 Hb_001338_050--Hb_005841_080 Hb_089920_010 Hb_089920_010 Hb_001338_050--Hb_089920_010 Hb_003175_020 Hb_003175_020 Hb_025194_010--Hb_003175_020 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_141142_010 Hb_141142_010 Hb_025194_010--Hb_141142_010 Hb_007144_010 Hb_007144_010 Hb_025194_010--Hb_007144_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.772 175.473 1.52364 11.8984 33.3162 42.4228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45278 2.77671 6.99399 79.0971 8.44002

CAGE analysis