Hb_005841_080

Information

Type -
Description -
Location Contig5841: 69418-78358
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11370g
description POPTRDRAFT_578723; hypothetical protein
nr
ID XP_002324530.2
description hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
swissprot
ID Q8GSM7
description Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HST PE=1 SV=1
trembl
ID B9IMB9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s11370g PE=4 SV=2
Gene Ontology
ID GO:0016747
description shikimate o-hydroxycinnamoyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49916: 74795-74942 , PASA_asmbl_49919: 78043-79048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005841_080 0.0 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
2 Hb_005157_010 0.1608016189 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_000685_060 0.1886515091 - - ring finger protein, putative [Ricinus communis]
4 Hb_003299_010 0.1895172596 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_002273_080 0.1912831332 - - geranylgeranyl reductase [Monoraphidium neglectum]
6 Hb_000215_410 0.2040519503 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
7 Hb_000106_070 0.207535435 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
8 Hb_001951_030 0.2075787841 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
9 Hb_011618_040 0.2084878572 - - conserved hypothetical protein [Ricinus communis]
10 Hb_089920_010 0.2127635874 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_000567_080 0.2182620522 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
12 Hb_001338_050 0.2187840493 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
13 Hb_001269_040 0.2239160361 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000215_340 0.2242039665 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
15 Hb_002273_050 0.2252088375 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
16 Hb_005147_040 0.2258211351 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
17 Hb_007144_010 0.2277355183 - - -
18 Hb_007382_050 0.2343516445 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
19 Hb_025194_010 0.2355966022 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
20 Hb_001544_080 0.2360878186 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_005841_080 Hb_005841_080 Hb_005157_010 Hb_005157_010 Hb_005841_080--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_005841_080--Hb_000685_060 Hb_003299_010 Hb_003299_010 Hb_005841_080--Hb_003299_010 Hb_002273_080 Hb_002273_080 Hb_005841_080--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070 Hb_005157_010--Hb_003299_010 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_005157_010--Hb_133636_010 Hb_000685_060--Hb_003504_040 Hb_000685_060--Hb_003299_010 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_000215_340 Hb_000215_340 Hb_000685_060--Hb_000215_340 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003299_010--Hb_003504_040 Hb_003299_010--Hb_133636_010 Hb_002273_050 Hb_002273_050 Hb_002273_080--Hb_002273_050 Hb_002273_080--Hb_000215_410 Hb_002686_280 Hb_002686_280 Hb_002273_080--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_080--Hb_129204_060 Hb_001269_690 Hb_001269_690 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_000215_410--Hb_002273_050 Hb_000215_410--Hb_129204_060 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_000215_410--Hb_001269_690 Hb_003052_200 Hb_003052_200 Hb_000106_070--Hb_003052_200 Hb_000670_110 Hb_000670_110 Hb_000106_070--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_000106_070--Hb_011618_040 Hb_000106_070--Hb_003299_010 Hb_011970_040 Hb_011970_040 Hb_000106_070--Hb_011970_040 Hb_003119_070 Hb_003119_070 Hb_000106_070--Hb_003119_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.40918 11.705 0.155007 1.41951 1.2843 1.18102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154035 0.565571 1.64157 8.64896 0.0425325

CAGE analysis