Hb_005157_010

Information

Type -
Description -
Location Contig5157: 10624-26076
Sequence    

Annotation

kegg
ID rcu:RCOM_1096970
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.10.2)
nr
ID XP_012091449.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
swissprot
ID O64781
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 OS=Arabidopsis thaliana GN=At1g61390 PE=2 SV=1
trembl
ID A0A067JDL7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21324 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus-specific glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46496: 11973-12111 , PASA_asmbl_46497: 12786-13792 , PASA_asmbl_46498: 14087-14947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005157_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
2 Hb_003299_010 0.1399769996 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_005841_080 0.1608016189 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
4 Hb_000685_060 0.1628576799 - - ring finger protein, putative [Ricinus communis]
5 Hb_001951_030 0.1695143605 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
6 Hb_003504_040 0.1705345434 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
7 Hb_133636_010 0.1706824982 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
8 Hb_005147_040 0.1899285385 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
9 Hb_001377_500 0.1919314083 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
10 Hb_003371_120 0.1920307115 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
11 Hb_089920_010 0.1930685227 - - PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_007144_010 0.1958437817 - - -
13 Hb_000997_110 0.1959591454 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
14 Hb_141142_010 0.1960169717 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
15 Hb_048653_020 0.2009745256 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_008616_060 0.20834708 - - syntaxin, putative [Ricinus communis]
17 Hb_001584_010 0.2090750423 - - kelch repeat protein, putative [Ricinus communis]
18 Hb_025194_010 0.209453656 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
19 Hb_000106_070 0.2113079635 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
20 Hb_012018_010 0.2138422226 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_005157_010 Hb_005157_010 Hb_003299_010 Hb_003299_010 Hb_005157_010--Hb_003299_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_000685_060 Hb_000685_060 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_005157_010--Hb_133636_010 Hb_003299_010--Hb_000685_060 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003299_010--Hb_003504_040 Hb_003299_010--Hb_133636_010 Hb_005841_080--Hb_000685_060 Hb_005841_080--Hb_003299_010 Hb_002273_080 Hb_002273_080 Hb_005841_080--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_005841_080--Hb_000215_410 Hb_000106_070 Hb_000106_070 Hb_005841_080--Hb_000106_070 Hb_000685_060--Hb_003504_040 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_000215_340 Hb_000215_340 Hb_000685_060--Hb_000215_340 Hb_007416_150 Hb_007416_150 Hb_001951_030--Hb_007416_150 Hb_000670_110 Hb_000670_110 Hb_001951_030--Hb_000670_110 Hb_011618_040 Hb_011618_040 Hb_001951_030--Hb_011618_040 Hb_089920_010 Hb_089920_010 Hb_001951_030--Hb_089920_010 Hb_008225_100 Hb_008225_100 Hb_001951_030--Hb_008225_100 Hb_002774_090 Hb_002774_090 Hb_003504_040--Hb_002774_090 Hb_067034_030 Hb_067034_030 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060 Hb_000844_010 Hb_000844_010 Hb_133636_010--Hb_000844_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30605 13.1729 0.784633 1.24057 0.847296 0.636333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208617 0.305968 0.373198 6.56137 0.0480536

CAGE analysis