Hb_067034_030

Information

Type -
Description -
Location Contig67034: 12618-21877
Sequence    

Annotation

kegg
ID rcu:RCOM_0612210
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002525637.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q7PC88
description ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=1 SV=1
trembl
ID B9SI18
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0612210 PE=4 SV=1
Gene Ontology
ID GO:0009506
description abc transporter g family member 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067034_030 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_012098_170 0.1431321471 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
3 Hb_000679_240 0.1561282117 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
4 Hb_006501_170 0.1562909752 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
5 Hb_001248_030 0.1609438424 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000645_240 0.165588467 - - AMP dependent ligase, putative [Ricinus communis]
7 Hb_000521_300 0.1686861615 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
8 Hb_007919_040 0.1690381691 - - PREDICTED: protein LYK5 [Jatropha curcas]
9 Hb_003504_040 0.1721254574 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
10 Hb_004195_190 0.172382301 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000086_370 0.1751659179 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
12 Hb_002928_180 0.1774786421 - - catalase CAT1 [Manihot esculenta]
13 Hb_004218_160 0.1789054338 - - NBS-LRR type disease resistance protein [Medicago truncatula]
14 Hb_057079_020 0.1797018332 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000589_220 0.1814980706 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_000685_060 0.1834846818 - - ring finger protein, putative [Ricinus communis]
17 Hb_003299_010 0.1860096729 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_004195_170 0.1889721767 - - ATP binding protein, putative [Ricinus communis]
19 Hb_003371_140 0.1891829685 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
20 Hb_002218_070 0.1902610489 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_067034_030 Hb_067034_030 Hb_012098_170 Hb_012098_170 Hb_067034_030--Hb_012098_170 Hb_000679_240 Hb_000679_240 Hb_067034_030--Hb_000679_240 Hb_006501_170 Hb_006501_170 Hb_067034_030--Hb_006501_170 Hb_001248_030 Hb_001248_030 Hb_067034_030--Hb_001248_030 Hb_000645_240 Hb_000645_240 Hb_067034_030--Hb_000645_240 Hb_000521_300 Hb_000521_300 Hb_067034_030--Hb_000521_300 Hb_001114_070 Hb_001114_070 Hb_012098_170--Hb_001114_070 Hb_007919_040 Hb_007919_040 Hb_012098_170--Hb_007919_040 Hb_012098_170--Hb_006501_170 Hb_006573_300 Hb_006573_300 Hb_012098_170--Hb_006573_300 Hb_012098_170--Hb_000645_240 Hb_000589_180 Hb_000589_180 Hb_000679_240--Hb_000589_180 Hb_000679_240--Hb_000521_300 Hb_002555_020 Hb_002555_020 Hb_000679_240--Hb_002555_020 Hb_004195_190 Hb_004195_190 Hb_000679_240--Hb_004195_190 Hb_000086_370 Hb_000086_370 Hb_000679_240--Hb_000086_370 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_007416_150 Hb_007416_150 Hb_001248_030--Hb_007416_150 Hb_009823_010 Hb_009823_010 Hb_001248_030--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_002304_140 Hb_002304_140 Hb_001248_030--Hb_002304_140 Hb_000866_090 Hb_000866_090 Hb_000645_240--Hb_000866_090 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000866_370 Hb_000866_370 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_001252_040 Hb_001252_040 Hb_000521_300--Hb_001252_040 Hb_000521_300--Hb_000086_370 Hb_000088_160 Hb_000088_160 Hb_000521_300--Hb_000088_160 Hb_001373_010 Hb_001373_010 Hb_000521_300--Hb_001373_010 Hb_000521_300--Hb_011214_140 Hb_000521_300--Hb_004195_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110148 2.70426 0.144206 0.47192 0.12377 0.0943166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18784 0.24638 0.108382 2.14254 0.498934

CAGE analysis