Hb_001114_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1114: 75309-88085
Sequence    

Annotation

kegg
ID vvi:100852913
description putative disease resistance protein At1g58400
nr
ID XP_012085867.1
description PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
swissprot
ID Q9STE7
description Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1
trembl
ID A0A0D9ZGJ8
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03477: 55846-75928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_070 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
2 Hb_006573_300 0.1100830231 - - ATP binding protein, putative [Ricinus communis]
3 Hb_007676_020 0.1316276619 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
4 Hb_020805_170 0.1417308916 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_031862_040 0.1549754954 - - purine transporter, putative [Ricinus communis]
6 Hb_000853_060 0.1588729025 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
7 Hb_012098_170 0.1610530412 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
8 Hb_000645_210 0.1668021208 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
9 Hb_007919_040 0.1672026932 - - PREDICTED: protein LYK5 [Jatropha curcas]
10 Hb_008066_070 0.1698172702 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
11 Hb_000699_230 0.1702406738 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_028811_010 0.1760311807 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
13 Hb_001726_110 0.1805641159 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
14 Hb_000928_040 0.1834168635 - - cytochrome P450, putative [Ricinus communis]
15 Hb_005433_060 0.1834489006 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
16 Hb_002631_040 0.1843025814 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
17 Hb_001486_030 0.1844054896 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000084_220 0.1875661189 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
19 Hb_001288_070 0.1881206004 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
20 Hb_127886_010 0.1882388903 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]

Gene co-expression network

sample Hb_001114_070 Hb_001114_070 Hb_006573_300 Hb_006573_300 Hb_001114_070--Hb_006573_300 Hb_007676_020 Hb_007676_020 Hb_001114_070--Hb_007676_020 Hb_020805_170 Hb_020805_170 Hb_001114_070--Hb_020805_170 Hb_031862_040 Hb_031862_040 Hb_001114_070--Hb_031862_040 Hb_000853_060 Hb_000853_060 Hb_001114_070--Hb_000853_060 Hb_012098_170 Hb_012098_170 Hb_001114_070--Hb_012098_170 Hb_006573_300--Hb_000853_060 Hb_006453_010 Hb_006453_010 Hb_006573_300--Hb_006453_010 Hb_006573_300--Hb_007676_020 Hb_004195_090 Hb_004195_090 Hb_006573_300--Hb_004195_090 Hb_006573_300--Hb_020805_170 Hb_008066_070 Hb_008066_070 Hb_007676_020--Hb_008066_070 Hb_007676_020--Hb_020805_170 Hb_000084_220 Hb_000084_220 Hb_007676_020--Hb_000084_220 Hb_007676_020--Hb_031862_040 Hb_020805_170--Hb_008066_070 Hb_000140_410 Hb_000140_410 Hb_020805_170--Hb_000140_410 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_000905_170 Hb_000905_170 Hb_020805_170--Hb_000905_170 Hb_031862_040--Hb_008066_070 Hb_001049_020 Hb_001049_020 Hb_031862_040--Hb_001049_020 Hb_005433_060 Hb_005433_060 Hb_031862_040--Hb_005433_060 Hb_001621_070 Hb_001621_070 Hb_031862_040--Hb_001621_070 Hb_001433_180 Hb_001433_180 Hb_031862_040--Hb_001433_180 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_003120_040 Hb_003120_040 Hb_000853_060--Hb_003120_040 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_067034_030 Hb_067034_030 Hb_012098_170--Hb_067034_030 Hb_012098_170--Hb_007919_040 Hb_006501_170 Hb_006501_170 Hb_012098_170--Hb_006501_170 Hb_012098_170--Hb_006573_300 Hb_000645_240 Hb_000645_240 Hb_012098_170--Hb_000645_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.309037 6.09604 1.1813 1.74502 0.338128 0.781552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75842 1.30612 1.97487 7.16548 1.04608

CAGE analysis