Hb_000022_180

Information

Type -
Description -
Location Contig22: 278491-285738
Sequence    

Annotation

kegg
ID tcc:TCM_038282
description CHY-type/CTCHY-type/RING-type Zinc finger protein isoform 1
nr
ID XP_012077474.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID A0A067KGZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07809 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22619: 278238-285612 , PASA_asmbl_22620: 278238-281258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_180 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_000645_240 0.1122023393 - - AMP dependent ligase, putative [Ricinus communis]
3 Hb_000789_240 0.1243550086 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
4 Hb_011861_080 0.1254484558 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
5 Hb_000866_370 0.1374682462 - - synaptotagmin, putative [Ricinus communis]
6 Hb_000866_090 0.1385144079 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
7 Hb_004108_170 0.1389266133 - - conserved hypothetical protein [Ricinus communis]
8 Hb_020805_170 0.1424085021 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
9 Hb_011310_200 0.1472616283 - - grr1, plant, putative [Ricinus communis]
10 Hb_000787_190 0.1548427202 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
11 Hb_000362_110 0.1549143872 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
12 Hb_000216_020 0.1551499141 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
13 Hb_004976_040 0.1562463821 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
14 Hb_000313_370 0.1576943783 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_089100_040 0.1615062615 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
16 Hb_008226_100 0.1626190659 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_001251_060 0.163484195 - - aldo/keto reductase AKR [Manihot esculenta]
18 Hb_001699_150 0.1635239638 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
19 Hb_000010_350 0.1642803674 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
20 Hb_001288_070 0.1645444121 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000022_180 Hb_000022_180 Hb_000645_240 Hb_000645_240 Hb_000022_180--Hb_000645_240 Hb_000789_240 Hb_000789_240 Hb_000022_180--Hb_000789_240 Hb_011861_080 Hb_011861_080 Hb_000022_180--Hb_011861_080 Hb_000866_370 Hb_000866_370 Hb_000022_180--Hb_000866_370 Hb_000866_090 Hb_000866_090 Hb_000022_180--Hb_000866_090 Hb_004108_170 Hb_004108_170 Hb_000022_180--Hb_004108_170 Hb_000645_240--Hb_000866_090 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000645_240--Hb_000866_370 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340 Hb_000175_120 Hb_000175_120 Hb_000789_240--Hb_000175_120 Hb_012565_080 Hb_012565_080 Hb_000789_240--Hb_012565_080 Hb_004109_380 Hb_004109_380 Hb_000789_240--Hb_004109_380 Hb_000571_160 Hb_000571_160 Hb_000789_240--Hb_000571_160 Hb_011828_030 Hb_011828_030 Hb_000789_240--Hb_011828_030 Hb_001414_040 Hb_001414_040 Hb_011861_080--Hb_001414_040 Hb_011861_080--Hb_000571_160 Hb_002631_200 Hb_002631_200 Hb_011861_080--Hb_002631_200 Hb_006907_140 Hb_006907_140 Hb_011861_080--Hb_006907_140 Hb_000049_150 Hb_000049_150 Hb_011861_080--Hb_000049_150 Hb_011287_050 Hb_011287_050 Hb_011861_080--Hb_011287_050 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000010_350 Hb_000010_350 Hb_000866_370--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_004108_170--Hb_000010_350 Hb_003060_090 Hb_003060_090 Hb_004108_170--Hb_003060_090 Hb_000062_080 Hb_000062_080 Hb_004108_170--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_004108_170--Hb_127599_010 Hb_004108_170--Hb_011861_080 Hb_000363_370 Hb_000363_370 Hb_004108_170--Hb_000363_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26343 23.2318 3.05982 6.24815 4.08375 6.91646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81942 1.32403 2.58209 18.2428 3.96633

CAGE analysis