Hb_117895_010

Information

Type -
Description -
Location Contig117895: 1-710
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID KDP45571.1
description hypothetical protein JCGZ_17178 [Jatropha curcas]
swissprot
ID C4B7M5
description Disease resistance protein RRS1 OS=Arabidopsis thaliana GN=RRS1 PE=2 SV=1
trembl
ID A0A067LAS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117895_010 0.0 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
2 Hb_000866_370 0.1111753991 - - synaptotagmin, putative [Ricinus communis]
3 Hb_001544_080 0.1231981448 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
4 Hb_011310_200 0.1438276014 - - grr1, plant, putative [Ricinus communis]
5 Hb_004108_170 0.1545936383 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002760_040 0.1553751629 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
7 Hb_003155_020 0.156982955 - - Rpp4C3 [Medicago truncatula]
8 Hb_002915_070 0.1596978794 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
9 Hb_011716_110 0.1599348689 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
10 Hb_000010_350 0.1602026791 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
11 Hb_002686_400 0.1603197846 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
12 Hb_009897_010 0.1614698521 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_001288_070 0.1647622586 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
14 Hb_001251_060 0.1710937763 - - aldo/keto reductase AKR [Manihot esculenta]
15 Hb_000805_230 0.1713997729 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
16 Hb_005147_040 0.1726116382 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
17 Hb_007576_200 0.1727867951 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000049_090 0.1732361501 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
19 Hb_000679_210 0.1756753835 - - grr1, plant, putative [Ricinus communis]
20 Hb_000732_080 0.1757877499 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]

Gene co-expression network

sample Hb_117895_010 Hb_117895_010 Hb_000866_370 Hb_000866_370 Hb_117895_010--Hb_000866_370 Hb_001544_080 Hb_001544_080 Hb_117895_010--Hb_001544_080 Hb_011310_200 Hb_011310_200 Hb_117895_010--Hb_011310_200 Hb_004108_170 Hb_004108_170 Hb_117895_010--Hb_004108_170 Hb_002760_040 Hb_002760_040 Hb_117895_010--Hb_002760_040 Hb_003155_020 Hb_003155_020 Hb_117895_010--Hb_003155_020 Hb_000010_350 Hb_000010_350 Hb_000866_370--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_000866_370--Hb_011310_200 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_011716_110 Hb_011716_110 Hb_001544_080--Hb_011716_110 Hb_001544_080--Hb_011310_200 Hb_001544_080--Hb_000866_370 Hb_009897_010 Hb_009897_010 Hb_001544_080--Hb_009897_010 Hb_029977_050 Hb_029977_050 Hb_001544_080--Hb_029977_050 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_057079_020 Hb_057079_020 Hb_011310_200--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_011310_200--Hb_001410_010 Hb_000216_020 Hb_000216_020 Hb_011310_200--Hb_000216_020 Hb_004108_170--Hb_000010_350 Hb_003060_090 Hb_003060_090 Hb_004108_170--Hb_003060_090 Hb_000062_080 Hb_000062_080 Hb_004108_170--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_004108_170--Hb_127599_010 Hb_011861_080 Hb_011861_080 Hb_004108_170--Hb_011861_080 Hb_000363_370 Hb_000363_370 Hb_004108_170--Hb_000363_370 Hb_009897_020 Hb_009897_020 Hb_002760_040--Hb_009897_020 Hb_005656_140 Hb_005656_140 Hb_002760_040--Hb_005656_140 Hb_003494_060 Hb_003494_060 Hb_002760_040--Hb_003494_060 Hb_002686_400 Hb_002686_400 Hb_002760_040--Hb_002686_400 Hb_002760_040--Hb_003155_020 Hb_003155_020--Hb_009897_010 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_005203_020 Hb_005203_020 Hb_003155_020--Hb_005203_020 Hb_001865_060 Hb_001865_060 Hb_003155_020--Hb_001865_060 Hb_003155_020--Hb_011716_110 Hb_001907_100 Hb_001907_100 Hb_003155_020--Hb_001907_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.74369 32.4694 1.66984 10.2996 3.38824 5.29718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69397 1.7743 6.15981 11.4669 4.1174

CAGE analysis