Hb_011861_080

Information

Type -
Description -
Location Contig11861: 75202-84602
Sequence    

Annotation

kegg
ID rcu:RCOM_0902410
description WD-repeat protein, putative
nr
ID KDP37032.1
description hypothetical protein JCGZ_06088 [Jatropha curcas]
swissprot
ID Q0WV90
description Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3
trembl
ID A0A067KLL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06088 PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein topless

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05532: 74997-80436 , PASA_asmbl_05533: 81133-82437 , PASA_asmbl_05534: 82438-83969 , PASA_asmbl_05535: 83970-84583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011861_080 0.0 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
2 Hb_001414_040 0.0943401221 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
3 Hb_000571_160 0.0960626849 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
4 Hb_002631_200 0.101585883 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
5 Hb_006907_140 0.1038707839 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000049_150 0.1102229747 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
7 Hb_011287_050 0.1111698218 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
8 Hb_011828_030 0.1144602626 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
9 Hb_000679_210 0.1187030516 - - grr1, plant, putative [Ricinus communis]
10 Hb_065500_030 0.1211716734 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
11 Hb_000009_120 0.123273512 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
12 Hb_001105_160 0.1236374075 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
13 Hb_000022_180 0.1254484558 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
14 Hb_178051_070 0.1260871891 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
15 Hb_001662_180 0.1282561754 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
16 Hb_000105_040 0.1283576435 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
17 Hb_001341_160 0.1285135712 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
18 Hb_003849_240 0.1285726634 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_003604_050 0.1291382194 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
20 Hb_007765_030 0.1294829027 - - PREDICTED: neutral ceramidase [Jatropha curcas]

Gene co-expression network

sample Hb_011861_080 Hb_011861_080 Hb_001414_040 Hb_001414_040 Hb_011861_080--Hb_001414_040 Hb_000571_160 Hb_000571_160 Hb_011861_080--Hb_000571_160 Hb_002631_200 Hb_002631_200 Hb_011861_080--Hb_002631_200 Hb_006907_140 Hb_006907_140 Hb_011861_080--Hb_006907_140 Hb_000049_150 Hb_000049_150 Hb_011861_080--Hb_000049_150 Hb_011287_050 Hb_011287_050 Hb_011861_080--Hb_011287_050 Hb_001414_040--Hb_006907_140 Hb_000371_060 Hb_000371_060 Hb_001414_040--Hb_000371_060 Hb_007765_030 Hb_007765_030 Hb_001414_040--Hb_007765_030 Hb_000009_120 Hb_000009_120 Hb_001414_040--Hb_000009_120 Hb_001341_160 Hb_001341_160 Hb_001414_040--Hb_001341_160 Hb_001259_120 Hb_001259_120 Hb_001414_040--Hb_001259_120 Hb_000571_160--Hb_000049_150 Hb_004109_380 Hb_004109_380 Hb_000571_160--Hb_004109_380 Hb_010809_010 Hb_010809_010 Hb_000571_160--Hb_010809_010 Hb_000571_160--Hb_006907_140 Hb_007576_210 Hb_007576_210 Hb_000571_160--Hb_007576_210 Hb_011828_030 Hb_011828_030 Hb_000571_160--Hb_011828_030 Hb_000083_270 Hb_000083_270 Hb_002631_200--Hb_000083_270 Hb_002153_030 Hb_002153_030 Hb_002631_200--Hb_002153_030 Hb_002631_200--Hb_000009_120 Hb_002631_200--Hb_000571_160 Hb_185830_070 Hb_185830_070 Hb_002631_200--Hb_185830_070 Hb_002005_030 Hb_002005_030 Hb_006907_140--Hb_002005_030 Hb_006907_140--Hb_001341_160 Hb_000172_340 Hb_000172_340 Hb_006907_140--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_006907_140--Hb_000010_420 Hb_004645_070 Hb_004645_070 Hb_006907_140--Hb_004645_070 Hb_000049_150--Hb_010809_010 Hb_000049_150--Hb_004109_380 Hb_000170_100 Hb_000170_100 Hb_000049_150--Hb_000170_100 Hb_000105_040 Hb_000105_040 Hb_000049_150--Hb_000105_040 Hb_006531_020 Hb_006531_020 Hb_000049_150--Hb_006531_020 Hb_001105_160 Hb_001105_160 Hb_011287_050--Hb_001105_160 Hb_003912_070 Hb_003912_070 Hb_011287_050--Hb_003912_070 Hb_005568_040 Hb_005568_040 Hb_011287_050--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_011287_050--Hb_012092_060 Hb_061878_010 Hb_061878_010 Hb_011287_050--Hb_061878_010 Hb_000487_380 Hb_000487_380 Hb_011287_050--Hb_000487_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69352 41.206 8.84857 18.0541 12.6699 15.1633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56572 2.75059 11.2327 30.1582 11.8648

CAGE analysis