Hb_185830_070

Information

Type -
Description -
Location Contig185830: 36533-47525
Sequence    

Annotation

kegg
ID rcu:RCOM_0820360
description nucleotide binding protein, putative
nr
ID XP_012082220.1
description PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LTT9
description Varicose-related protein OS=Arabidopsis thaliana GN=VCR PE=2 SV=1
trembl
ID A0A067JYI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18209: 33336-35779 , PASA_asmbl_18213: 39216-47485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185830_070 0.0 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
2 Hb_000940_150 0.0650569592 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
3 Hb_000175_120 0.0900274788 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
4 Hb_002027_190 0.0900399743 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
5 Hb_000631_110 0.0918353539 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
6 Hb_000574_530 0.0921124489 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
7 Hb_004218_250 0.093555734 - - PREDICTED: beta-galactosidase [Jatropha curcas]
8 Hb_000083_270 0.0986199166 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
9 Hb_000340_490 0.0992985222 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
10 Hb_000684_290 0.1011274659 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
11 Hb_002631_200 0.1042271041 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
12 Hb_007632_010 0.10475513 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
13 Hb_002005_080 0.1075690841 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
14 Hb_002639_080 0.1082527238 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
15 Hb_075315_010 0.1107137888 - - ornithine aminotransferase [Camellia sinensis]
16 Hb_000950_060 0.1123853604 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
17 Hb_000792_040 0.1133042323 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
18 Hb_001105_160 0.1177812268 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
19 Hb_006531_020 0.1189985069 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
20 Hb_000049_250 0.119273136 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_185830_070 Hb_185830_070 Hb_000940_150 Hb_000940_150 Hb_185830_070--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_185830_070--Hb_000175_120 Hb_002027_190 Hb_002027_190 Hb_185830_070--Hb_002027_190 Hb_000631_110 Hb_000631_110 Hb_185830_070--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_185830_070--Hb_000574_530 Hb_004218_250 Hb_004218_250 Hb_185830_070--Hb_004218_250 Hb_000940_150--Hb_000631_110 Hb_000940_150--Hb_000175_120 Hb_000022_170 Hb_000022_170 Hb_000940_150--Hb_000022_170 Hb_000940_150--Hb_004218_250 Hb_000940_150--Hb_000574_530 Hb_000175_120--Hb_000631_110 Hb_001662_180 Hb_001662_180 Hb_000175_120--Hb_001662_180 Hb_000035_010 Hb_000035_010 Hb_000175_120--Hb_000035_010 Hb_014497_020 Hb_014497_020 Hb_000175_120--Hb_014497_020 Hb_000321_090 Hb_000321_090 Hb_002027_190--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_000080_110 Hb_000080_110 Hb_002027_190--Hb_000080_110 Hb_020805_180 Hb_020805_180 Hb_002027_190--Hb_020805_180 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010 Hb_007747_170 Hb_007747_170 Hb_002027_190--Hb_007747_170 Hb_000083_270 Hb_000083_270 Hb_000631_110--Hb_000083_270 Hb_000105_030 Hb_000105_030 Hb_000631_110--Hb_000105_030 Hb_002005_080 Hb_002005_080 Hb_000631_110--Hb_002005_080 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_001124_050 Hb_001124_050 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_006531_020 Hb_006531_020 Hb_000574_530--Hb_006531_020 Hb_009486_090 Hb_009486_090 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020 Hb_000317_350 Hb_000317_350 Hb_004218_250--Hb_000317_350 Hb_004218_250--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_004218_250--Hb_000022_150 Hb_004218_250--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42206 18.5728 3.63865 11.538 7.36992 10.1462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67543 4.2976 8.07905 27.0725 15.0275

CAGE analysis