Hb_000317_350

Information

Type -
Description -
Location Contig317: 245160-248604
Sequence    

Annotation

kegg
ID rcu:RCOM_1176800
description hypothetical protein
nr
ID XP_012088379.1
description PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
swissprot
ID A5YVF1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1
trembl
ID A0A067JW68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25872 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33397: 242728-245786 , PASA_asmbl_33398: 245380-246420 , PASA_asmbl_33399: 246490-246987 , PASA_asmbl_33400: 246988-248993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_350 0.0 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
2 Hb_028960_030 0.0949837324 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
3 Hb_000049_250 0.0955467435 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_005333_050 0.095898317 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
5 Hb_000321_090 0.0962222584 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
6 Hb_000009_030 0.099376333 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
7 Hb_020805_180 0.1016660872 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
8 Hb_000227_330 0.1016661785 - - Acyl-CoA synthetase [Ricinus communis]
9 Hb_000787_200 0.1021132353 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_021576_010 0.1024878235 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
11 Hb_012325_010 0.1069017985 - - hypothetical protein RCOM_0068670 [Ricinus communis]
12 Hb_000080_110 0.106923081 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
13 Hb_000022_150 0.1076386281 - - -
14 Hb_004218_250 0.1076508561 - - PREDICTED: beta-galactosidase [Jatropha curcas]
15 Hb_001691_200 0.1077583959 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
16 Hb_000979_220 0.1091013444 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
17 Hb_000455_130 0.1105880483 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
18 Hb_006916_110 0.1106377124 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
19 Hb_000009_120 0.1107921069 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
20 Hb_000834_230 0.1128511426 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000317_350 Hb_000317_350 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_005333_050 Hb_005333_050 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_020805_180 Hb_020805_180 Hb_000317_350--Hb_020805_180 Hb_011224_160 Hb_011224_160 Hb_028960_030--Hb_011224_160 Hb_003683_010 Hb_003683_010 Hb_028960_030--Hb_003683_010 Hb_000979_220 Hb_000979_220 Hb_028960_030--Hb_000979_220 Hb_011671_270 Hb_011671_270 Hb_028960_030--Hb_011671_270 Hb_011674_040 Hb_011674_040 Hb_028960_030--Hb_011674_040 Hb_021576_010 Hb_021576_010 Hb_028960_030--Hb_021576_010 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000049_250--Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_002046_010 Hb_002046_010 Hb_005333_050--Hb_002046_010 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_000022_150 Hb_000022_150 Hb_005333_050--Hb_000022_150 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_000009_120 Hb_000009_120 Hb_005333_050--Hb_000009_120 Hb_002889_020 Hb_002889_020 Hb_005333_050--Hb_002889_020 Hb_000321_090--Hb_000080_110 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_000321_090--Hb_020805_180 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_000976_110 Hb_000976_110 Hb_000009_030--Hb_000976_110 Hb_005489_040 Hb_005489_040 Hb_000009_030--Hb_005489_040 Hb_000318_150 Hb_000318_150 Hb_000009_030--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000009_030--Hb_000787_200 Hb_160608_010 Hb_160608_010 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_020805_180--Hb_080147_050 Hb_002851_010 Hb_002851_010 Hb_020805_180--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_020805_180--Hb_000649_060 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_020805_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.20232 17.4794 15.4767 13.1855 8.68534 6.26556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.20939 5.73721 8.67951 37.2396 21.574

CAGE analysis