Hb_000022_150

Information

Type -
Description -
Location Contig22: 241866-243296
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008270
description swim zinc finger family protein isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22609: 242581-262422 , PASA_asmbl_22611: 242581-263801 , PASA_asmbl_22615: 236253-260587 , PASA_asmbl_22617: 237196-260343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_150 0.0 - - -
2 Hb_005333_050 0.0830126566 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
3 Hb_000742_170 0.0908734344 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000317_350 0.1076386281 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
5 Hb_000800_110 0.1117175618 - - NAD dehydrogenase, putative [Ricinus communis]
6 Hb_004218_250 0.1122553657 - - PREDICTED: beta-galactosidase [Jatropha curcas]
7 Hb_000950_060 0.1129400394 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
8 Hb_000022_170 0.1135441292 - - PREDICTED: uncharacterized protein LOC105628473 [Jatropha curcas]
9 Hb_002046_010 0.1141467366 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007123_050 0.1144110499 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
11 Hb_020805_180 0.1170574188 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
12 Hb_001341_180 0.1183518474 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
13 Hb_000035_010 0.1184048103 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
14 Hb_002908_040 0.119035435 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
15 Hb_001221_180 0.1201183981 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_003683_010 0.1207860701 - - longevity assurance factor, putative [Ricinus communis]
17 Hb_004048_120 0.1212215553 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
18 Hb_000834_230 0.1213297688 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
19 Hb_011485_060 0.1231438421 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
20 Hb_002805_210 0.1247106254 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]

Gene co-expression network

sample Hb_000022_150 Hb_000022_150 Hb_005333_050 Hb_005333_050 Hb_000022_150--Hb_005333_050 Hb_000742_170 Hb_000742_170 Hb_000022_150--Hb_000742_170 Hb_000317_350 Hb_000317_350 Hb_000022_150--Hb_000317_350 Hb_000800_110 Hb_000800_110 Hb_000022_150--Hb_000800_110 Hb_004218_250 Hb_004218_250 Hb_000022_150--Hb_004218_250 Hb_000950_060 Hb_000950_060 Hb_000022_150--Hb_000950_060 Hb_002046_010 Hb_002046_010 Hb_005333_050--Hb_002046_010 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_000009_120 Hb_000009_120 Hb_005333_050--Hb_000009_120 Hb_002889_020 Hb_002889_020 Hb_005333_050--Hb_002889_020 Hb_000742_170--Hb_002046_010 Hb_003683_010 Hb_003683_010 Hb_000742_170--Hb_003683_010 Hb_000742_170--Hb_005333_050 Hb_000011_270 Hb_000011_270 Hb_000742_170--Hb_000011_270 Hb_004096_190 Hb_004096_190 Hb_000742_170--Hb_004096_190 Hb_028960_030 Hb_028960_030 Hb_000317_350--Hb_028960_030 Hb_000049_250 Hb_000049_250 Hb_000317_350--Hb_000049_250 Hb_000317_350--Hb_005333_050 Hb_000321_090 Hb_000321_090 Hb_000317_350--Hb_000321_090 Hb_000009_030 Hb_000009_030 Hb_000317_350--Hb_000009_030 Hb_020805_180 Hb_020805_180 Hb_000317_350--Hb_020805_180 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000800_110--Hb_000950_060 Hb_185830_070 Hb_185830_070 Hb_004218_250--Hb_185830_070 Hb_000940_150 Hb_000940_150 Hb_004218_250--Hb_000940_150 Hb_004218_250--Hb_000317_350 Hb_004218_250--Hb_000022_170 Hb_002027_190 Hb_002027_190 Hb_004218_250--Hb_002027_190 Hb_002639_080 Hb_002639_080 Hb_000950_060--Hb_002639_080 Hb_000950_060--Hb_000035_010 Hb_003913_110 Hb_003913_110 Hb_000950_060--Hb_003913_110 Hb_114151_020 Hb_114151_020 Hb_000950_060--Hb_114151_020 Hb_000175_120 Hb_000175_120 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49611 12.3635 7.96873 7.82849 11.1713 7.33168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.29033 4.25007 3.81611 25.4422 17.0426

CAGE analysis