Hb_004096_190

Information

Type -
Description -
Location Contig4096: 175235-190743
Sequence    

Annotation

kegg
ID rcu:RCOM_1727260
description Ran GTPase binding protein, putative
nr
ID XP_012077947.1
description PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067K9Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12968 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40435: 174268-175075 , PASA_asmbl_40436: 175316-190696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_190 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_028872_070 0.072279588 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
3 Hb_000603_030 0.0759635886 - - Ribonuclease III, putative [Ricinus communis]
4 Hb_003943_020 0.0762048884 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
5 Hb_000134_270 0.0793178739 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
6 Hb_001733_030 0.0854500448 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
7 Hb_000398_080 0.0868475674 - - tip120, putative [Ricinus communis]
8 Hb_011689_060 0.0874364586 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
9 Hb_133702_030 0.0876755489 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
10 Hb_005289_040 0.0909606988 - - poly(A) polymerase, putative [Ricinus communis]
11 Hb_000027_050 0.0911931245 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
12 Hb_013358_070 0.0916123265 - - protein with unknown function [Ricinus communis]
13 Hb_016777_040 0.0920477807 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
14 Hb_005333_160 0.092081445 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
15 Hb_171900_070 0.0924893028 - - -
16 Hb_002471_240 0.0934497713 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
17 Hb_000103_570 0.0934554779 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
18 Hb_128548_010 0.0935216899 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000318_120 0.0937873216 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
20 Hb_002681_090 0.0948529135 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004096_190 Hb_004096_190 Hb_028872_070 Hb_028872_070 Hb_004096_190--Hb_028872_070 Hb_000603_030 Hb_000603_030 Hb_004096_190--Hb_000603_030 Hb_003943_020 Hb_003943_020 Hb_004096_190--Hb_003943_020 Hb_000134_270 Hb_000134_270 Hb_004096_190--Hb_000134_270 Hb_001733_030 Hb_001733_030 Hb_004096_190--Hb_001733_030 Hb_000398_080 Hb_000398_080 Hb_004096_190--Hb_000398_080 Hb_028872_070--Hb_000603_030 Hb_028872_070--Hb_000398_080 Hb_160459_040 Hb_160459_040 Hb_028872_070--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_028872_070--Hb_009771_110 Hb_133702_030 Hb_133702_030 Hb_028872_070--Hb_133702_030 Hb_000603_030--Hb_000398_080 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_000523_080 Hb_000523_080 Hb_003943_020--Hb_000523_080 Hb_000318_120 Hb_000318_120 Hb_003943_020--Hb_000318_120 Hb_128548_010 Hb_128548_010 Hb_003943_020--Hb_128548_010 Hb_005333_160 Hb_005333_160 Hb_003943_020--Hb_005333_160 Hb_013358_070 Hb_013358_070 Hb_003943_020--Hb_013358_070 Hb_001723_140 Hb_001723_140 Hb_003943_020--Hb_001723_140 Hb_000044_040 Hb_000044_040 Hb_000134_270--Hb_000044_040 Hb_000134_270--Hb_000318_120 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_001733_030--Hb_133702_030 Hb_000365_030 Hb_000365_030 Hb_001733_030--Hb_000365_030 Hb_004109_370 Hb_004109_370 Hb_001733_030--Hb_004109_370 Hb_001454_370 Hb_001454_370 Hb_001733_030--Hb_001454_370 Hb_006501_010 Hb_006501_010 Hb_001733_030--Hb_006501_010 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_004267_040 Hb_000398_080--Hb_000563_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.3317 35.1464 40.4058 26.0376 32.93 38.6632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3684 13.7695 12.728 55.7063 37.0436

CAGE analysis