Hb_001454_370

Information

Type -
Description -
Location Contig1454: 280365-286769
Sequence    

Annotation

kegg
ID pop:POPTR_0010s01570g
description POPTRDRAFT_725677; MULTIFUNCTIONAL family protein
nr
ID XP_012083968.1
description PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
swissprot
ID Q39659
description Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1
trembl
ID A0A067JVA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18897 PE=3 SV=1
Gene Ontology
ID GO:0005618
description glyoxysomal fatty acid beta-oxidation multifunctional protein mfp-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11801: 280757-286699 , PASA_asmbl_11802: 280314-286699 , PASA_asmbl_11803: 280787-282835
cDNA
(Sanger)
(ID:Location)		 035_I16.ab1: 284215-286668 , 039_E17.ab1: 284215-286668 , 041_C11.ab1: 284194-286699

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_370 0.0 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
2 Hb_133702_030 0.066381005 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
3 Hb_000505_020 0.070242751 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
4 Hb_004096_070 0.0712115274 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
5 Hb_002078_100 0.0732894522 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
6 Hb_001235_140 0.0765174037 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
7 Hb_001935_110 0.0788975308 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
8 Hb_019654_040 0.0827530112 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
9 Hb_086287_010 0.0833631129 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
10 Hb_009296_010 0.0839026546 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
11 Hb_010053_030 0.0858412989 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
12 Hb_000470_070 0.0868230263 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
13 Hb_001733_030 0.087101159 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
14 Hb_000333_060 0.0876470637 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
15 Hb_025477_040 0.087858896 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
16 Hb_004668_060 0.0887515229 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
17 Hb_011689_060 0.0892015426 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
18 Hb_028872_070 0.0897104838 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
19 Hb_001377_160 0.0908661361 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
20 Hb_012053_080 0.0910250888 - - AP-2 complex subunit alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_001454_370 Hb_001454_370 Hb_133702_030 Hb_133702_030 Hb_001454_370--Hb_133702_030 Hb_000505_020 Hb_000505_020 Hb_001454_370--Hb_000505_020 Hb_004096_070 Hb_004096_070 Hb_001454_370--Hb_004096_070 Hb_002078_100 Hb_002078_100 Hb_001454_370--Hb_002078_100 Hb_001235_140 Hb_001235_140 Hb_001454_370--Hb_001235_140 Hb_001935_110 Hb_001935_110 Hb_001454_370--Hb_001935_110 Hb_001733_030 Hb_001733_030 Hb_133702_030--Hb_001733_030 Hb_000182_040 Hb_000182_040 Hb_133702_030--Hb_000182_040 Hb_000120_280 Hb_000120_280 Hb_133702_030--Hb_000120_280 Hb_007657_020 Hb_007657_020 Hb_133702_030--Hb_007657_020 Hb_000603_030 Hb_000603_030 Hb_133702_030--Hb_000603_030 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_004096_070--Hb_010053_030 Hb_004096_070--Hb_001235_140 Hb_012114_080 Hb_012114_080 Hb_004096_070--Hb_012114_080 Hb_002157_050 Hb_002157_050 Hb_004096_070--Hb_002157_050 Hb_011689_060 Hb_011689_060 Hb_004096_070--Hb_011689_060 Hb_000470_070 Hb_000470_070 Hb_002078_100--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_002078_100--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_002078_100--Hb_000109_100 Hb_019654_040 Hb_019654_040 Hb_002078_100--Hb_019654_040 Hb_001235_140--Hb_010053_030 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_001935_110--Hb_019654_040 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2827 31.3126 32.6594 31.9204 41.2266 43.2354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4697 8.6537 17.6465 43.2201 21.5343

CAGE analysis