Hb_011689_060

Information

Type -
Description -
Location Contig11689: 55289-59556
Sequence    

Annotation

kegg
ID rcu:RCOM_0678880
description hypothetical protein
nr
ID XP_012069461.1
description PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
swissprot
ID Q0WPJ7
description Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1
trembl
ID A0A067KV80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02060 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rf298

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05234: 54812-59483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011689_060 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
2 Hb_000505_020 0.0797953938 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
3 Hb_001235_140 0.0806933215 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
4 Hb_002078_100 0.0811545814 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
5 Hb_171900_070 0.0848346932 - - -
6 Hb_004096_070 0.0852146211 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
7 Hb_005333_160 0.0854344728 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
8 Hb_004096_190 0.0874364586 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_000109_100 0.0882959644 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
10 Hb_001454_370 0.0892015426 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
11 Hb_010053_030 0.0893694325 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
12 Hb_003943_020 0.089941883 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
13 Hb_012114_080 0.0928467176 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
14 Hb_003498_120 0.0945430413 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
15 Hb_104061_020 0.0946827503 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
16 Hb_002815_030 0.0958772019 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
17 Hb_000044_040 0.0960734009 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
18 Hb_000086_560 0.0982550087 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
19 Hb_001377_160 0.0982861 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
20 Hb_028872_070 0.0992684766 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011689_060 Hb_011689_060 Hb_000505_020 Hb_000505_020 Hb_011689_060--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_011689_060--Hb_001235_140 Hb_002078_100 Hb_002078_100 Hb_011689_060--Hb_002078_100 Hb_171900_070 Hb_171900_070 Hb_011689_060--Hb_171900_070 Hb_004096_070 Hb_004096_070 Hb_011689_060--Hb_004096_070 Hb_005333_160 Hb_005333_160 Hb_011689_060--Hb_005333_160 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_000470_070 Hb_000470_070 Hb_002078_100--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_002078_100--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_002078_100--Hb_000109_100 Hb_019654_040 Hb_019654_040 Hb_002078_100--Hb_019654_040 Hb_171900_070--Hb_005333_160 Hb_000359_120 Hb_000359_120 Hb_171900_070--Hb_000359_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_000086_560 Hb_000086_560 Hb_171900_070--Hb_000086_560 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_004096_070--Hb_010053_030 Hb_001454_370 Hb_001454_370 Hb_004096_070--Hb_001454_370 Hb_004096_070--Hb_001235_140 Hb_012114_080 Hb_012114_080 Hb_004096_070--Hb_012114_080 Hb_002157_050 Hb_002157_050 Hb_004096_070--Hb_002157_050 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_005333_160--Hb_000086_560 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1278 19.2708 15.7332 15.1781 22.4276 20.6485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0742 7.64497 7.83525 27.7209 16.0794

CAGE analysis