Hb_002157_050

Information

Type -
Description -
Location Contig2157: 28338-32824
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21550g
description POPTRDRAFT_1067453; hypothetical protein
nr
ID KDP43620.1
description hypothetical protein JCGZ_16907 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16907 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22287: 28117-28537 , PASA_asmbl_22288: 28264-28641 , PASA_asmbl_22290: 29545-32943
cDNA
(Sanger)
(ID:Location)		 038_H19.ab1: 28117-28520 , 039_H12.ab1: 28117-28520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_050 0.0 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
2 Hb_003780_090 0.0764956583 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
3 Hb_004096_070 0.0808442041 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
4 Hb_005333_160 0.0882361298 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
5 Hb_008568_010 0.090512573 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
6 Hb_000359_120 0.1030070442 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011689_060 0.1033668683 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_023344_010 0.1060586733 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
9 Hb_012114_080 0.1071993358 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
10 Hb_010053_030 0.1076559729 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
11 Hb_011344_090 0.1124671142 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
12 Hb_000505_020 0.112943644 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_001047_200 0.1132096402 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
14 Hb_000010_360 0.1142838812 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
15 Hb_000184_150 0.115438837 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
16 Hb_005260_040 0.1155523063 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
17 Hb_002374_320 0.116520159 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
18 Hb_000823_030 0.1178195233 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
19 Hb_001452_220 0.1180718501 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
20 Hb_001953_150 0.1180923682 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002157_050 Hb_002157_050 Hb_003780_090 Hb_003780_090 Hb_002157_050--Hb_003780_090 Hb_004096_070 Hb_004096_070 Hb_002157_050--Hb_004096_070 Hb_005333_160 Hb_005333_160 Hb_002157_050--Hb_005333_160 Hb_008568_010 Hb_008568_010 Hb_002157_050--Hb_008568_010 Hb_000359_120 Hb_000359_120 Hb_002157_050--Hb_000359_120 Hb_011689_060 Hb_011689_060 Hb_002157_050--Hb_011689_060 Hb_002890_100 Hb_002890_100 Hb_003780_090--Hb_002890_100 Hb_118840_050 Hb_118840_050 Hb_003780_090--Hb_118840_050 Hb_029695_020 Hb_029695_020 Hb_003780_090--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_003780_090--Hb_001047_200 Hb_000010_360 Hb_000010_360 Hb_003780_090--Hb_000010_360 Hb_010053_030 Hb_010053_030 Hb_004096_070--Hb_010053_030 Hb_001454_370 Hb_001454_370 Hb_004096_070--Hb_001454_370 Hb_001235_140 Hb_001235_140 Hb_004096_070--Hb_001235_140 Hb_012114_080 Hb_012114_080 Hb_004096_070--Hb_012114_080 Hb_004096_070--Hb_011689_060 Hb_171900_070 Hb_171900_070 Hb_005333_160--Hb_171900_070 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_000086_560 Hb_000086_560 Hb_005333_160--Hb_000086_560 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_005333_160--Hb_011689_060 Hb_010661_050 Hb_010661_050 Hb_008568_010--Hb_010661_050 Hb_000505_020 Hb_000505_020 Hb_008568_010--Hb_000505_020 Hb_000109_100 Hb_000109_100 Hb_008568_010--Hb_000109_100 Hb_000120_610 Hb_000120_610 Hb_008568_010--Hb_000120_610 Hb_000821_010 Hb_000821_010 Hb_008568_010--Hb_000821_010 Hb_000270_460 Hb_000270_460 Hb_000359_120--Hb_000270_460 Hb_000359_120--Hb_171900_070 Hb_001953_150 Hb_001953_150 Hb_000359_120--Hb_001953_150 Hb_006658_040 Hb_006658_040 Hb_000359_120--Hb_006658_040 Hb_000359_120--Hb_000086_560 Hb_011689_060--Hb_000505_020 Hb_011689_060--Hb_001235_140 Hb_002078_100 Hb_002078_100 Hb_011689_060--Hb_002078_100 Hb_011689_060--Hb_171900_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.0359 37.609 27.8929 13.2493 32.7234 33.0616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.639 8.34228 7.36716 45.8717 14.2166

CAGE analysis