Hb_012114_080

Information

Type -
Description -
Location Contig12114: 59132-67068
Sequence    

Annotation

kegg
ID rcu:RCOM_1686670
description Glutamate--cysteine ligase, chloroplast precursor, putative (EC:6.3.2.2)
nr
ID ADE06226.1
description gamma-glutamylcysteine synthetase [Hevea brasiliensis]
swissprot
ID Q1W2L8
description Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2
trembl
ID D5LYI6
description Gamma-glutamylcysteine synthetase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0009570
description glutamate--cysteine chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06509: 59122-67078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012114_080 0.0 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
2 Hb_004096_070 0.0791414865 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
3 Hb_001486_160 0.0889835758 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_010661_050 0.0901281406 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
5 Hb_001235_140 0.090176024 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
6 Hb_010053_030 0.0910801569 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
7 Hb_000352_260 0.0912079162 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
8 Hb_011689_060 0.0928467176 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
9 Hb_000922_360 0.0929864994 - - -
10 Hb_000089_120 0.0939728782 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_008160_030 0.0954275943 - - DNA binding protein, putative [Ricinus communis]
12 Hb_001318_020 0.0973200367 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
13 Hb_104061_020 0.1004987694 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
14 Hb_000579_230 0.1011842782 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
15 Hb_000664_070 0.1012667214 - - PREDICTED: protein cereblon [Jatropha curcas]
16 Hb_006569_030 0.1013745118 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
17 Hb_011618_090 0.1019685729 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
18 Hb_001153_190 0.1020460237 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
19 Hb_000505_020 0.1023203449 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
20 Hb_007083_030 0.1038241078 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012114_080 Hb_012114_080 Hb_004096_070 Hb_004096_070 Hb_012114_080--Hb_004096_070 Hb_001486_160 Hb_001486_160 Hb_012114_080--Hb_001486_160 Hb_010661_050 Hb_010661_050 Hb_012114_080--Hb_010661_050 Hb_001235_140 Hb_001235_140 Hb_012114_080--Hb_001235_140 Hb_010053_030 Hb_010053_030 Hb_012114_080--Hb_010053_030 Hb_000352_260 Hb_000352_260 Hb_012114_080--Hb_000352_260 Hb_004096_070--Hb_010053_030 Hb_001454_370 Hb_001454_370 Hb_004096_070--Hb_001454_370 Hb_004096_070--Hb_001235_140 Hb_002157_050 Hb_002157_050 Hb_004096_070--Hb_002157_050 Hb_011689_060 Hb_011689_060 Hb_004096_070--Hb_011689_060 Hb_000025_410 Hb_000025_410 Hb_001486_160--Hb_000025_410 Hb_005337_090 Hb_005337_090 Hb_001486_160--Hb_005337_090 Hb_001089_110 Hb_001089_110 Hb_001486_160--Hb_001089_110 Hb_005779_010 Hb_005779_010 Hb_001486_160--Hb_005779_010 Hb_005000_260 Hb_005000_260 Hb_001486_160--Hb_005000_260 Hb_000505_020 Hb_000505_020 Hb_010661_050--Hb_000505_020 Hb_003498_120 Hb_003498_120 Hb_010661_050--Hb_003498_120 Hb_000594_040 Hb_000594_040 Hb_010661_050--Hb_000594_040 Hb_008568_010 Hb_008568_010 Hb_010661_050--Hb_008568_010 Hb_010661_050--Hb_001235_140 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_001235_140--Hb_000505_020 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_008160_030 Hb_008160_030 Hb_000352_260--Hb_008160_030 Hb_000363_400 Hb_000363_400 Hb_000352_260--Hb_000363_400 Hb_010417_070 Hb_010417_070 Hb_000352_260--Hb_010417_070 Hb_000823_030 Hb_000823_030 Hb_000352_260--Hb_000823_030 Hb_009083_070 Hb_009083_070 Hb_000352_260--Hb_009083_070 Hb_001723_010 Hb_001723_010 Hb_000352_260--Hb_001723_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.4163 34.065 25.4124 19.296 26.2861 26.6171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3748 13.5617 17.7687 45.7728 14.0235

CAGE analysis