Hb_001486_160

Information

Type -
Description -
Location Contig1486: 115328-122812
Sequence    

Annotation

kegg
ID cic:CICLE_v10019212mg
description hypothetical protein
nr
ID XP_012084594.1
description PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067JTZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20181 PE=4 SV=1
Gene Ontology
ID GO:0005794
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12241: 115436-115584 , PASA_asmbl_12242: 116111-117608 , PASA_asmbl_12243: 119047-119439 , PASA_asmbl_12244: 119451-122701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_160 0.0 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
2 Hb_000025_410 0.0777182726 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
3 Hb_005337_090 0.0854214919 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
4 Hb_001089_110 0.0866282835 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012114_080 0.0889835758 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
6 Hb_005779_010 0.0891572119 - - catalytic, putative [Ricinus communis]
7 Hb_005000_260 0.0901838158 - - recA family protein [Populus trichocarpa]
8 Hb_006355_010 0.0905471283 - - PREDICTED: protein NLRC3 [Jatropha curcas]
9 Hb_000922_360 0.0915017227 - - -
10 Hb_001799_050 0.0928647418 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
11 Hb_000089_120 0.0932088041 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_164544_010 0.0933070146 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
13 Hb_002784_020 0.0959850032 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
14 Hb_002175_030 0.0961847668 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
15 Hb_000679_310 0.0970133993 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
16 Hb_000367_010 0.0976112878 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
17 Hb_011609_140 0.0985188798 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
18 Hb_003680_150 0.0986709422 - - srpk, putative [Ricinus communis]
19 Hb_000009_090 0.0986756409 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
20 Hb_183612_040 0.0990522819 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_160 Hb_001486_160 Hb_000025_410 Hb_000025_410 Hb_001486_160--Hb_000025_410 Hb_005337_090 Hb_005337_090 Hb_001486_160--Hb_005337_090 Hb_001089_110 Hb_001089_110 Hb_001486_160--Hb_001089_110 Hb_012114_080 Hb_012114_080 Hb_001486_160--Hb_012114_080 Hb_005779_010 Hb_005779_010 Hb_001486_160--Hb_005779_010 Hb_005000_260 Hb_005000_260 Hb_001486_160--Hb_005000_260 Hb_001227_030 Hb_001227_030 Hb_000025_410--Hb_001227_030 Hb_008406_200 Hb_008406_200 Hb_000025_410--Hb_008406_200 Hb_002890_290 Hb_002890_290 Hb_000025_410--Hb_002890_290 Hb_005653_090 Hb_005653_090 Hb_000025_410--Hb_005653_090 Hb_000696_230 Hb_000696_230 Hb_000025_410--Hb_000696_230 Hb_000403_050 Hb_000403_050 Hb_000025_410--Hb_000403_050 Hb_005337_090--Hb_001089_110 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_004096_070 Hb_004096_070 Hb_012114_080--Hb_004096_070 Hb_010661_050 Hb_010661_050 Hb_012114_080--Hb_010661_050 Hb_001235_140 Hb_001235_140 Hb_012114_080--Hb_001235_140 Hb_010053_030 Hb_010053_030 Hb_012114_080--Hb_010053_030 Hb_000352_260 Hb_000352_260 Hb_012114_080--Hb_000352_260 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_005779_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_003861_050 Hb_003861_050 Hb_005779_010--Hb_003861_050 Hb_005779_010--Hb_000005_220 Hb_006922_010 Hb_006922_010 Hb_005000_260--Hb_006922_010 Hb_003370_030 Hb_003370_030 Hb_005000_260--Hb_003370_030 Hb_002900_090 Hb_002900_090 Hb_005000_260--Hb_002900_090 Hb_000739_100 Hb_000739_100 Hb_005000_260--Hb_000739_100 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_007163_120 Hb_007163_120 Hb_005000_260--Hb_007163_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.77344 4.18969 3.57157 2.60524 3.63466 4.12447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99052 3.47983 2.46256 5.176 2.31966

CAGE analysis