Hb_010661_050

Information

Type -
Description -
Location Contig10661: 50520-56083
Sequence    

Annotation

kegg
ID fve:101304515
description phosphoenolpyruvate carboxykinase [ATP]-like
nr
ID XP_004288307.1
description PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
swissprot
ID Q9T074
description Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1
trembl
ID V4SQN9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025088mg PE=3 SV=1
Gene Ontology
ID GO:0004612
description phosphoenolpyruvate carboxykinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02071: 50566-56024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010661_050 0.0 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
2 Hb_000505_020 0.0758305458 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
3 Hb_003498_120 0.0848695087 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
4 Hb_000594_040 0.0895655835 - - hypothetical protein L484_013922 [Morus notabilis]
5 Hb_008568_010 0.0896849472 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
6 Hb_012114_080 0.0901281406 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
7 Hb_001235_140 0.0912064003 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
8 Hb_001377_160 0.0928864513 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
9 Hb_000221_250 0.0938296548 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
10 Hb_007123_030 0.0962832774 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
11 Hb_000109_100 0.0969920727 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
12 Hb_004668_060 0.0987758781 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
13 Hb_001454_370 0.0992635522 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
14 Hb_005260_010 0.1045457425 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
15 Hb_004096_070 0.1045630185 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
16 Hb_000664_070 0.1057125334 - - PREDICTED: protein cereblon [Jatropha curcas]
17 Hb_007083_030 0.1061871914 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_008147_040 0.1062039437 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
19 Hb_010053_030 0.1073636293 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
20 Hb_154114_010 0.1080239595 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010661_050 Hb_010661_050 Hb_000505_020 Hb_000505_020 Hb_010661_050--Hb_000505_020 Hb_003498_120 Hb_003498_120 Hb_010661_050--Hb_003498_120 Hb_000594_040 Hb_000594_040 Hb_010661_050--Hb_000594_040 Hb_008568_010 Hb_008568_010 Hb_010661_050--Hb_008568_010 Hb_012114_080 Hb_012114_080 Hb_010661_050--Hb_012114_080 Hb_001235_140 Hb_001235_140 Hb_010661_050--Hb_001235_140 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_005260_010 Hb_005260_010 Hb_000594_040--Hb_005260_010 Hb_154114_010 Hb_154114_010 Hb_000594_040--Hb_154114_010 Hb_000664_070 Hb_000664_070 Hb_000594_040--Hb_000664_070 Hb_002163_010 Hb_002163_010 Hb_000594_040--Hb_002163_010 Hb_000418_140 Hb_000418_140 Hb_000594_040--Hb_000418_140 Hb_008147_040 Hb_008147_040 Hb_000594_040--Hb_008147_040 Hb_002157_050 Hb_002157_050 Hb_008568_010--Hb_002157_050 Hb_008568_010--Hb_000505_020 Hb_008568_010--Hb_000109_100 Hb_000120_610 Hb_000120_610 Hb_008568_010--Hb_000120_610 Hb_000821_010 Hb_000821_010 Hb_008568_010--Hb_000821_010 Hb_004096_070 Hb_004096_070 Hb_012114_080--Hb_004096_070 Hb_001486_160 Hb_001486_160 Hb_012114_080--Hb_001486_160 Hb_012114_080--Hb_001235_140 Hb_012114_080--Hb_010053_030 Hb_000352_260 Hb_000352_260 Hb_012114_080--Hb_000352_260 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.063 114.447 62.8198 59.2758 93.7964 92.8597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.027 28.3295 44.2648 116.577 48.5462

CAGE analysis