Hb_008147_040

Information

Type -
Description -
Location Contig8147: 25383-32783
Sequence    

Annotation

kegg
ID rcu:RCOM_1167770
description hypothetical protein
nr
ID XP_012088138.1
description PREDICTED: protein FLX-like 2 [Jatropha curcas]
swissprot
ID Q84TD8
description Protein FLX-like 2 OS=Arabidopsis thaliana GN=FLXL2 PE=1 SV=1
trembl
ID A0A067JXT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59330: 25417-32678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_040 0.0 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
2 Hb_001277_020 0.0593795627 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
3 Hb_000664_070 0.0619096852 - - PREDICTED: protein cereblon [Jatropha curcas]
4 Hb_154114_010 0.0712002764 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
5 Hb_000556_170 0.0738275982 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
6 Hb_000640_310 0.0741323788 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
7 Hb_000594_040 0.0779904302 - - hypothetical protein L484_013922 [Morus notabilis]
8 Hb_001369_130 0.0831697699 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
9 Hb_140049_040 0.0840912365 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
10 Hb_002325_040 0.0840979164 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
11 Hb_000345_140 0.0847111065 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
12 Hb_002876_130 0.0856784415 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
13 Hb_000025_320 0.0859455036 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
14 Hb_001301_170 0.0867849201 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
15 Hb_002046_110 0.0869808475 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
16 Hb_000928_220 0.0871818253 - - PREDICTED: protein SCAI [Jatropha curcas]
17 Hb_003633_070 0.0875737316 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
18 Hb_000418_140 0.0877977005 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
19 Hb_000236_470 0.089119745 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
20 Hb_000160_350 0.0895407649 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]

Gene co-expression network

sample Hb_008147_040 Hb_008147_040 Hb_001277_020 Hb_001277_020 Hb_008147_040--Hb_001277_020 Hb_000664_070 Hb_000664_070 Hb_008147_040--Hb_000664_070 Hb_154114_010 Hb_154114_010 Hb_008147_040--Hb_154114_010 Hb_000556_170 Hb_000556_170 Hb_008147_040--Hb_000556_170 Hb_000640_310 Hb_000640_310 Hb_008147_040--Hb_000640_310 Hb_000594_040 Hb_000594_040 Hb_008147_040--Hb_000594_040 Hb_001430_080 Hb_001430_080 Hb_001277_020--Hb_001430_080 Hb_000236_470 Hb_000236_470 Hb_001277_020--Hb_000236_470 Hb_140049_040 Hb_140049_040 Hb_001277_020--Hb_140049_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_000011_100 Hb_000011_100 Hb_001277_020--Hb_000011_100 Hb_000664_070--Hb_000594_040 Hb_000771_180 Hb_000771_180 Hb_000664_070--Hb_000771_180 Hb_000664_070--Hb_000640_310 Hb_002783_310 Hb_002783_310 Hb_000664_070--Hb_002783_310 Hb_000160_350 Hb_000160_350 Hb_000664_070--Hb_000160_350 Hb_154114_010--Hb_000594_040 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_000291_060 Hb_000291_060 Hb_154114_010--Hb_000291_060 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040 Hb_000556_170--Hb_000640_310 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_000640_310--Hb_001799_050 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_005260_010 Hb_005260_010 Hb_000594_040--Hb_005260_010 Hb_002163_010 Hb_002163_010 Hb_000594_040--Hb_002163_010 Hb_000418_140 Hb_000418_140 Hb_000594_040--Hb_000418_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.1703 26.2291 16.2353 10.1221 22.5931 14.5396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5535 8.30326 11.9851 16.6678 10.7486

CAGE analysis