Hb_000664_070

Information

Type -
Description -
Location Contig664: 172862-183645
Sequence    

Annotation

kegg
ID rcu:RCOM_0801570
description ATP-dependent peptidase, putative
nr
ID XP_012077389.1
description PREDICTED: protein cereblon [Jatropha curcas]
swissprot
ID Q68EH9
description Protein cereblon OS=Danio rerio GN=crbn PE=1 SV=1
trembl
ID A0A067KD72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07742 PE=4 SV=1
Gene Ontology
ID GO:0004176
description atp-dependent protease la domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53137: 180917-181127 , PASA_asmbl_53138: 181444-183506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000664_070 0.0 - - PREDICTED: protein cereblon [Jatropha curcas]
2 Hb_000594_040 0.0572836894 - - hypothetical protein L484_013922 [Morus notabilis]
3 Hb_008147_040 0.0619096852 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
4 Hb_000771_180 0.0668451073 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_000640_310 0.0689667017 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
6 Hb_002783_310 0.0692606548 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
7 Hb_000160_350 0.0715672783 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
8 Hb_154114_010 0.0720791283 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
9 Hb_007520_030 0.0727376976 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
10 Hb_104061_020 0.0751469342 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
11 Hb_010053_030 0.0759831781 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
12 Hb_000032_010 0.076157735 - - crooked neck protein, putative [Ricinus communis]
13 Hb_001799_050 0.0788182554 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
14 Hb_131646_010 0.079956544 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_002835_230 0.0812667299 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_003040_020 0.0818052418 - - PREDICTED: protein cereblon [Jatropha curcas]
17 Hb_001301_170 0.081950324 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
18 Hb_027760_080 0.082397137 - - cytochrome P450, putative [Ricinus communis]
19 Hb_004785_100 0.0832488032 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000856_140 0.0834717167 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000664_070 Hb_000664_070 Hb_000594_040 Hb_000594_040 Hb_000664_070--Hb_000594_040 Hb_008147_040 Hb_008147_040 Hb_000664_070--Hb_008147_040 Hb_000771_180 Hb_000771_180 Hb_000664_070--Hb_000771_180 Hb_000640_310 Hb_000640_310 Hb_000664_070--Hb_000640_310 Hb_002783_310 Hb_002783_310 Hb_000664_070--Hb_002783_310 Hb_000160_350 Hb_000160_350 Hb_000664_070--Hb_000160_350 Hb_005260_010 Hb_005260_010 Hb_000594_040--Hb_005260_010 Hb_154114_010 Hb_154114_010 Hb_000594_040--Hb_154114_010 Hb_002163_010 Hb_002163_010 Hb_000594_040--Hb_002163_010 Hb_000418_140 Hb_000418_140 Hb_000594_040--Hb_000418_140 Hb_000594_040--Hb_008147_040 Hb_001277_020 Hb_001277_020 Hb_008147_040--Hb_001277_020 Hb_008147_040--Hb_154114_010 Hb_000556_170 Hb_000556_170 Hb_008147_040--Hb_000556_170 Hb_008147_040--Hb_000640_310 Hb_000771_180--Hb_002783_310 Hb_050847_020 Hb_050847_020 Hb_000771_180--Hb_050847_020 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_001799_050 Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_002783_310--Hb_050847_020 Hb_007520_030 Hb_007520_030 Hb_002783_310--Hb_007520_030 Hb_002783_310--Hb_000334_270 Hb_000046_010 Hb_000046_010 Hb_002783_310--Hb_000046_010 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_022256_060 Hb_022256_060 Hb_000160_350--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3531 23.8927 16.2359 10.4571 28.2784 18.098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7385 10.3961 11.6787 19.8298 9.28489

CAGE analysis