Hb_005965_030

Information

Type -
Description -
Location Contig5965: 21021-34422
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13230g
description POPTRDRAFT_253872; hypothetical protein
nr
ID KDP29026.1
description hypothetical protein JCGZ_16415 [Jatropha curcas]
swissprot
ID Q8L627
description snRNA-activating protein complex subunit OS=Arabidopsis thaliana GN=SRD2 PE=1 SV=1
trembl
ID A0A067JYI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16415 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50392: 22506-22622 , PASA_asmbl_50393: 30017-30554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005965_030 0.0 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
2 Hb_000160_350 0.0422792461 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
3 Hb_002157_260 0.0534358683 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
4 Hb_004785_100 0.0621118909 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000679_340 0.0644238238 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
6 Hb_003638_090 0.0674963373 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
7 Hb_022256_060 0.06833026 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
8 Hb_001140_030 0.0703095098 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
9 Hb_131646_010 0.0714721167 - - protein arginine n-methyltransferase, putative [Ricinus communis]
10 Hb_032208_040 0.071512517 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
11 Hb_002078_110 0.0718450146 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_006688_050 0.0730689096 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
13 Hb_003633_070 0.0734425135 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
14 Hb_001832_130 0.0746961501 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
15 Hb_079526_030 0.0750455426 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
16 Hb_002835_230 0.0757294417 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_000771_180 0.0766991096 - - polypyrimidine tract binding protein, putative [Ricinus communis]
18 Hb_004631_190 0.076959815 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
19 Hb_111198_010 0.0777435332 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
20 Hb_001408_100 0.0781143134 - - pseudouridylate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005965_030 Hb_005965_030 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_079526_030 Hb_079526_030 Hb_000160_350--Hb_079526_030 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_000160_350--Hb_022256_060 Hb_002045_150 Hb_002045_150 Hb_002157_260--Hb_002045_150 Hb_002157_260--Hb_000160_350 Hb_006452_160 Hb_006452_160 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_005289_040 Hb_005289_040 Hb_003638_090--Hb_005289_040 Hb_001488_200 Hb_001488_200 Hb_003638_090--Hb_001488_200 Hb_019654_040 Hb_019654_040 Hb_003638_090--Hb_019654_040 Hb_002805_190 Hb_002805_190 Hb_003638_090--Hb_002805_190 Hb_002374_260 Hb_002374_260 Hb_003638_090--Hb_002374_260 Hb_022256_060--Hb_008887_020 Hb_008695_110 Hb_008695_110 Hb_022256_060--Hb_008695_110 Hb_022256_060--Hb_000230_090 Hb_022256_060--Hb_001821_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.948 31.1565 35.3181 16.6202 39.617 30.1901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5635 19.8622 15.4601 22.6729 14.7159

CAGE analysis