Hb_005260_010

Information

Type -
Description -
Location Contig5260: 8647-17859
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35520g
description POPTRDRAFT_797875; vesicle tethering family protein
nr
ID XP_012071873.1
description PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
swissprot
ID B0F9L4
description Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2
trembl
ID A0A067LNG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10240 PE=4 SV=1
Gene Ontology
ID GO:0000139
description golgin candidate 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46997: 9318-17798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005260_010 0.0 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
2 Hb_000594_040 0.0554159284 - - hypothetical protein L484_013922 [Morus notabilis]
3 Hb_000768_180 0.0565641351 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
4 Hb_000236_220 0.0634552197 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
5 Hb_000640_310 0.0683627061 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
6 Hb_000191_130 0.06973725 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_000418_140 0.0705136609 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
8 Hb_000556_170 0.0710959465 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
9 Hb_001799_050 0.07396625 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
10 Hb_023344_010 0.0768404029 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
11 Hb_000622_250 0.0768920947 - - atpob1, putative [Ricinus communis]
12 Hb_154114_010 0.0773891348 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
13 Hb_000264_030 0.078302284 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
14 Hb_000406_230 0.0793576273 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_000032_010 0.0805126933 - - crooked neck protein, putative [Ricinus communis]
16 Hb_000010_360 0.0820222258 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
17 Hb_000917_160 0.0827090872 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
18 Hb_001141_370 0.0828816168 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
19 Hb_005542_050 0.0829049107 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
20 Hb_007894_130 0.0837844188 - - hypothetical protein RCOM_0584960 [Ricinus communis]

Gene co-expression network

sample Hb_005260_010 Hb_005260_010 Hb_000594_040 Hb_000594_040 Hb_005260_010--Hb_000594_040 Hb_000768_180 Hb_000768_180 Hb_005260_010--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_005260_010--Hb_000236_220 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_000418_140 Hb_000418_140 Hb_005260_010--Hb_000418_140 Hb_154114_010 Hb_154114_010 Hb_000594_040--Hb_154114_010 Hb_000664_070 Hb_000664_070 Hb_000594_040--Hb_000664_070 Hb_002163_010 Hb_002163_010 Hb_000594_040--Hb_002163_010 Hb_000594_040--Hb_000418_140 Hb_008147_040 Hb_008147_040 Hb_000594_040--Hb_008147_040 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_093084_070 Hb_093084_070 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070 Hb_001799_050 Hb_001799_050 Hb_000640_310--Hb_001799_050 Hb_000640_310--Hb_000556_170 Hb_000236_470 Hb_000236_470 Hb_000640_310--Hb_000236_470 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_000062_470 Hb_000062_470 Hb_000191_130--Hb_000062_470 Hb_000917_160 Hb_000917_160 Hb_000191_130--Hb_000917_160 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_003633_070 Hb_003633_070 Hb_000418_140--Hb_003633_070 Hb_001143_250 Hb_001143_250 Hb_000418_140--Hb_001143_250 Hb_000162_280 Hb_000162_280 Hb_000418_140--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_000418_140--Hb_009112_010 Hb_000796_190 Hb_000796_190 Hb_000418_140--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_000418_140--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.071 62.7704 24.4028 23.741 42.6262 41.3158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4601 17.8784 14.591 37.2365 21.3987

CAGE analysis