Hb_001235_140

Information

Type -
Description -
Location Contig1235: 185589-191148
Sequence    

Annotation

kegg
ID rcu:RCOM_1060990
description protein arginine n-methyltransferase, putative
nr
ID XP_012069975.1
description PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
swissprot
ID Q944R7
description Protein arginine N-methyltransferase 1.6 OS=Arabidopsis thaliana GN=PRMT16 PE=2 SV=2
trembl
ID A0A067KUI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03397 PE=4 SV=1
Gene Ontology
ID GO:0008168
description protein arginine n-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07166: 184569-184924 , PASA_asmbl_07167: 186099-187579 , PASA_asmbl_07168: 187582-188520 , PASA_asmbl_07169: 188647-188742 , PASA_asmbl_07170: 189313-191020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_140 0.0 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
2 Hb_010053_030 0.0642463388 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
3 Hb_007657_020 0.0669262505 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
4 Hb_001377_160 0.067375982 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
5 Hb_002681_090 0.0676983724 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
6 Hb_000505_020 0.0677124107 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
7 Hb_000089_120 0.0691226291 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_003498_120 0.0692019865 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
9 Hb_002311_290 0.0694215198 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
10 Hb_000923_080 0.0714118975 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
11 Hb_104061_020 0.0732420701 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
12 Hb_005588_090 0.0734271019 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
13 Hb_004096_070 0.0736815594 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
14 Hb_002217_030 0.0764417645 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
15 Hb_001454_370 0.0765174037 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
16 Hb_000398_080 0.0790004649 - - tip120, putative [Ricinus communis]
17 Hb_007123_030 0.079100447 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
18 Hb_002815_030 0.0795239179 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
19 Hb_002631_170 0.0802677871 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
20 Hb_011689_060 0.0806933215 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_140 Hb_001235_140 Hb_010053_030 Hb_010053_030 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000505_020 Hb_000505_020 Hb_001235_140--Hb_000505_020 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_000398_080 Hb_000398_080 Hb_007657_020--Hb_000398_080 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_007657_020--Hb_000603_030 Hb_007657_020--Hb_000089_120 Hb_003943_010 Hb_003943_010 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_002681_090--Hb_002311_290 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_000505_020--Hb_104061_020 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_000089_120--Hb_000261_240 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000089_120--Hb_000398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45691 4.73134 3.64557 3.90586 5.68785 5.32325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.83542 2.48304 1.98809 6.73812 2.94599

CAGE analysis