Hb_008568_010

Information

Type -
Description -
Location Contig8568: 303-1269
Sequence    

Annotation

kegg
ID rcu:RCOM_1584090
description Phosphoenolpyruvate carboxykinase [ATP], putative (EC:4.1.1.49)
nr
ID XP_002509997.1
description Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
swissprot
ID P42066
description Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1
trembl
ID B9R6Q4
description Phosphoenolpyruvate carboxykinase [ATP], putative OS=Ricinus communis GN=RCOM_1584090 PE=3 SV=1
Gene Ontology
ID GO:0004612
description phosphoenolpyruvate carboxykinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60642: 578-1546
cDNA
(Sanger)
(ID:Location)		 003_A22.ab1: 578-1538 , 024_K19.ab1: 926-1546

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008568_010 0.0 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
2 Hb_010661_050 0.0896849472 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
3 Hb_002157_050 0.090512573 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
4 Hb_000505_020 0.0945233011 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
5 Hb_000109_100 0.0996843291 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
6 Hb_000120_610 0.1039470411 - - mitotic control protein dis3, putative [Ricinus communis]
7 Hb_000821_010 0.1061013671 - - PREDICTED: auxin response factor 19-like [Jatropha curcas]
8 Hb_000594_040 0.1075254291 - - hypothetical protein L484_013922 [Morus notabilis]
9 Hb_023344_010 0.1091555366 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
10 Hb_000264_100 0.110095255 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002163_010 0.1108572593 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
12 Hb_003780_090 0.1136576432 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
13 Hb_000664_070 0.1153549759 - - PREDICTED: protein cereblon [Jatropha curcas]
14 Hb_003299_070 0.1154636291 - - AMP deaminase [Theobroma cacao]
15 Hb_005260_010 0.1163015578 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
16 Hb_010053_030 0.1181837184 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
17 Hb_000032_010 0.1186250819 - - crooked neck protein, putative [Ricinus communis]
18 Hb_000856_140 0.1199000442 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
19 Hb_110482_010 0.1204329094 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
20 Hb_011173_030 0.1208555053 - - pumilio, putative [Ricinus communis]

Gene co-expression network

sample Hb_008568_010 Hb_008568_010 Hb_010661_050 Hb_010661_050 Hb_008568_010--Hb_010661_050 Hb_002157_050 Hb_002157_050 Hb_008568_010--Hb_002157_050 Hb_000505_020 Hb_000505_020 Hb_008568_010--Hb_000505_020 Hb_000109_100 Hb_000109_100 Hb_008568_010--Hb_000109_100 Hb_000120_610 Hb_000120_610 Hb_008568_010--Hb_000120_610 Hb_000821_010 Hb_000821_010 Hb_008568_010--Hb_000821_010 Hb_010661_050--Hb_000505_020 Hb_003498_120 Hb_003498_120 Hb_010661_050--Hb_003498_120 Hb_000594_040 Hb_000594_040 Hb_010661_050--Hb_000594_040 Hb_012114_080 Hb_012114_080 Hb_010661_050--Hb_012114_080 Hb_001235_140 Hb_001235_140 Hb_010661_050--Hb_001235_140 Hb_003780_090 Hb_003780_090 Hb_002157_050--Hb_003780_090 Hb_004096_070 Hb_004096_070 Hb_002157_050--Hb_004096_070 Hb_005333_160 Hb_005333_160 Hb_002157_050--Hb_005333_160 Hb_000359_120 Hb_000359_120 Hb_002157_050--Hb_000359_120 Hb_011689_060 Hb_011689_060 Hb_002157_050--Hb_011689_060 Hb_000505_020--Hb_000109_100 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_000160_290 Hb_000160_290 Hb_000109_100--Hb_000160_290 Hb_000109_100--Hb_002078_100 Hb_000300_440 Hb_000300_440 Hb_000109_100--Hb_000300_440 Hb_001623_480 Hb_001623_480 Hb_000109_100--Hb_001623_480 Hb_003299_070 Hb_003299_070 Hb_000109_100--Hb_003299_070 Hb_000264_100 Hb_000264_100 Hb_000120_610--Hb_000264_100 Hb_000594_020 Hb_000594_020 Hb_000120_610--Hb_000594_020 Hb_002659_060 Hb_002659_060 Hb_000120_610--Hb_002659_060 Hb_140049_020 Hb_140049_020 Hb_000120_610--Hb_140049_020 Hb_004899_070 Hb_004899_070 Hb_000120_610--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_610--Hb_004970_160 Hb_000002_440 Hb_000002_440 Hb_000821_010--Hb_000002_440 Hb_004920_130 Hb_004920_130 Hb_000821_010--Hb_004920_130 Hb_000821_010--Hb_000594_020 Hb_000821_010--Hb_000264_100 Hb_010080_060 Hb_010080_060 Hb_000821_010--Hb_010080_060 Hb_000997_030 Hb_000997_030 Hb_000821_010--Hb_000997_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
166.637 198.437 93.2966 50.5103 193.358 159.23
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.54 31.5886 55.7684 200.853 69.8279

CAGE analysis