Hb_000816_250

Information

Type -
Description -
Location Contig816: 246290-252997
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07520g
description POPTRDRAFT_738341; hypothetical protein
nr
ID XP_012091170.1
description PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
swissprot
ID Q501D5
description Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1
trembl
ID B9IPI4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s07520g PE=4 SV=2
Gene Ontology
ID GO:0016021
description tlc atp adp transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59426: 246199-251031 , PASA_asmbl_59427: 246610-247789 , PASA_asmbl_59428: 247829-250946 , PASA_asmbl_59429: 249192-250700 , PASA_asmbl_59430: 251089-251554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_250 0.0 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
2 Hb_014834_150 0.0514509561 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000313_220 0.0630501242 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
4 Hb_002889_010 0.064036986 - - ubx domain-containing, putative [Ricinus communis]
5 Hb_005779_010 0.0651245869 - - catalytic, putative [Ricinus communis]
6 Hb_001946_400 0.0665469778 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
7 Hb_000976_140 0.0666640474 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
8 Hb_000035_470 0.0673398075 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
9 Hb_002849_130 0.0673883832 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_000417_130 0.0676335151 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
11 Hb_005867_070 0.0690647941 - - DNA binding protein, putative [Ricinus communis]
12 Hb_123915_040 0.0695105775 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
13 Hb_003861_060 0.0696922157 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_003861_050 0.069824992 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
15 Hb_000336_210 0.0700983043 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
16 Hb_001021_150 0.0704491529 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
17 Hb_001959_110 0.0708520571 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
18 Hb_000905_110 0.0709413594 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
19 Hb_001006_330 0.071531489 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
20 Hb_000331_110 0.0729456526 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_250 Hb_000816_250 Hb_014834_150 Hb_014834_150 Hb_000816_250--Hb_014834_150 Hb_000313_220 Hb_000313_220 Hb_000816_250--Hb_000313_220 Hb_002889_010 Hb_002889_010 Hb_000816_250--Hb_002889_010 Hb_005779_010 Hb_005779_010 Hb_000816_250--Hb_005779_010 Hb_001946_400 Hb_001946_400 Hb_000816_250--Hb_001946_400 Hb_000976_140 Hb_000976_140 Hb_000816_250--Hb_000976_140 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_003513_010 Hb_003513_010 Hb_014834_150--Hb_003513_010 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_002849_130 Hb_002849_130 Hb_000313_220--Hb_002849_130 Hb_000313_220--Hb_000976_140 Hb_015807_050 Hb_015807_050 Hb_000313_220--Hb_015807_050 Hb_001959_110 Hb_001959_110 Hb_000313_220--Hb_001959_110 Hb_004452_110 Hb_004452_110 Hb_000313_220--Hb_004452_110 Hb_005730_040 Hb_005730_040 Hb_000313_220--Hb_005730_040 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_005779_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_005779_010--Hb_003861_050 Hb_000005_220 Hb_000005_220 Hb_005779_010--Hb_000005_220 Hb_001021_150 Hb_001021_150 Hb_001946_400--Hb_001021_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_008847_030 Hb_008847_030 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_000976_140--Hb_005730_040 Hb_000976_140--Hb_002849_130 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.2776 4.43536 6.62717 5.52149 5.54708 4.29743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19183 5.90676 3.80879 5.83993 5.63736

CAGE analysis