Hb_010417_070

Information

Type -
Description -
Location Contig10417: 40945-50632
Sequence    

Annotation

kegg
ID rcu:RCOM_1689250
description sumo ligase, putative
nr
ID XP_012086814.1
description PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
swissprot
ID O94451
description E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3
trembl
ID B9RCI3
description Sumo ligase, putative OS=Ricinus communis GN=RCOM_1689250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_070 0.0 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
2 Hb_005389_160 0.0626765305 - - PREDICTED: casein kinase I [Jatropha curcas]
3 Hb_060094_020 0.0682698163 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
4 Hb_003866_080 0.0685918364 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
5 Hb_001534_210 0.0690447276 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
6 Hb_004410_070 0.069860363 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
7 Hb_002085_030 0.069887429 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
8 Hb_005542_050 0.0705693469 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
9 Hb_001754_030 0.071262177 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
10 Hb_001767_140 0.0732806276 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
11 Hb_000347_120 0.0739359848 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
12 Hb_000703_200 0.0772915709 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
13 Hb_003835_070 0.0773427828 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
14 Hb_000373_100 0.0781182066 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
15 Hb_001430_080 0.0802103599 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
16 Hb_012194_030 0.0803766917 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_002325_040 0.0803924868 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
18 Hb_000556_170 0.0806320594 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
19 Hb_000099_040 0.0809112605 - - unnamed protein product [Coffea canephora]
20 Hb_184798_080 0.0812688899 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]

Gene co-expression network

sample Hb_010417_070 Hb_010417_070 Hb_005389_160 Hb_005389_160 Hb_010417_070--Hb_005389_160 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_004410_070 Hb_004410_070 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_000373_100 Hb_000373_100 Hb_005389_160--Hb_000373_100 Hb_000347_120 Hb_000347_120 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_023226_070 Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_001754_030 Hb_001754_030 Hb_060094_020--Hb_001754_030 Hb_001089_050 Hb_001089_050 Hb_003866_080--Hb_001089_050 Hb_000402_230 Hb_000402_230 Hb_003866_080--Hb_000402_230 Hb_004143_100 Hb_004143_100 Hb_003866_080--Hb_004143_100 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_003866_080--Hb_002085_030 Hb_002492_010 Hb_002492_010 Hb_003866_080--Hb_002492_010 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_007426_060 Hb_007426_060 Hb_001534_210--Hb_007426_060 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_009302_030 Hb_009302_030 Hb_001534_210--Hb_009302_030 Hb_007017_070 Hb_007017_070 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_012305_030 Hb_012305_030 Hb_002085_030--Hb_012305_030 Hb_012194_030 Hb_012194_030 Hb_002085_030--Hb_012194_030 Hb_002085_030--Hb_001767_140 Hb_001279_120 Hb_001279_120 Hb_002085_030--Hb_001279_120 Hb_000329_370 Hb_000329_370 Hb_002085_030--Hb_000329_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6651 31.5078 19.6229 11.6067 12.8731 16.2863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.15155 9.54569 12.9995 17.3461 12.5521

CAGE analysis