Hb_000373_100

Information

Type transcription factor
Description TF Family: bZIP
Location Contig373: 133213-139873
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07020g
description POPTRDRAFT_411874; hypothetical protein
nr
ID XP_012066035.1
description PREDICTED: transcription factor VIP1 [Jatropha curcas]
swissprot
ID Q9MA75
description Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1
trembl
ID A0A067L3F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25192 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor vip1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38114: 133223-139755 , PASA_asmbl_38115: 133448-135153 , PASA_asmbl_38116: 135244-136703
cDNA
(Sanger)
(ID:Location)		 037_A08.ab1: 135848-136703 , 045_E14.ab1: 135921-136703

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_100 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
2 Hb_005389_160 0.0420591838 - - PREDICTED: casein kinase I [Jatropha curcas]
3 Hb_000347_120 0.0528633081 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
4 Hb_007054_040 0.0614495125 - - PREDICTED: protein RST1 [Jatropha curcas]
5 Hb_000703_200 0.0779705888 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
6 Hb_010417_070 0.0781182066 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
7 Hb_001545_150 0.0786790732 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
8 Hb_004410_070 0.0801803122 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
9 Hb_004899_040 0.0806800484 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
10 Hb_000363_120 0.0823829015 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
11 Hb_000236_410 0.084183157 - - Paramyosin, putative [Ricinus communis]
12 Hb_004586_290 0.0844004103 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
13 Hb_004785_030 0.0848078571 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
14 Hb_000094_090 0.0859941736 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
15 Hb_000442_010 0.0880736072 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
16 Hb_001541_250 0.0884408877 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
17 Hb_003866_080 0.0887415682 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
18 Hb_005542_050 0.0890031285 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
19 Hb_000025_280 0.0900409529 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
20 Hb_000940_200 0.0902800217 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]

Gene co-expression network

sample Hb_000373_100 Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_000373_100--Hb_005389_160 Hb_000347_120 Hb_000347_120 Hb_000373_100--Hb_000347_120 Hb_007054_040 Hb_007054_040 Hb_000373_100--Hb_007054_040 Hb_000703_200 Hb_000703_200 Hb_000373_100--Hb_000703_200 Hb_010417_070 Hb_010417_070 Hb_000373_100--Hb_010417_070 Hb_001545_150 Hb_001545_150 Hb_000373_100--Hb_001545_150 Hb_005389_160--Hb_010417_070 Hb_005389_160--Hb_000347_120 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_000347_120--Hb_010417_070 Hb_004440_040 Hb_004440_040 Hb_000347_120--Hb_004440_040 Hb_000094_320 Hb_000094_320 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070 Hb_001541_250 Hb_001541_250 Hb_007054_040--Hb_001541_250 Hb_001862_110 Hb_001862_110 Hb_007054_040--Hb_001862_110 Hb_001935_140 Hb_001935_140 Hb_007054_040--Hb_001935_140 Hb_007054_040--Hb_005389_160 Hb_000169_170 Hb_000169_170 Hb_007054_040--Hb_000169_170 Hb_009302_030 Hb_009302_030 Hb_000703_200--Hb_009302_030 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9011 90.4086 32.5411 30.7861 33.1095 26.92
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9991 22.5726 26.5274 38.5464 29.5377

CAGE analysis