Hb_000169_170

Information

Type -
Description -
Location Contig169: 246420-247883
Sequence    

Annotation

kegg
ID rcu:RCOM_0589820
description 3-hydroxyacyl-CoA dehyrogenase, putative (EC:1.1.1.157)
nr
ID XP_002528242.1
description 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
swissprot
ID Q45223
description 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=hbdA PE=3 SV=1
trembl
ID B9SQH3
description 3-hydroxyacyl-CoA dehyrogenase, putative OS=Ricinus communis GN=RCOM_0589820 PE=4 SV=1
Gene Ontology
ID GO:0005777
description probable 3-hydroxyacyl- dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15710: 246424-247784
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_170 0.0 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
2 Hb_007054_040 0.0754944875 - - PREDICTED: protein RST1 [Jatropha curcas]
3 Hb_000009_330 0.0820062374 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
4 Hb_001541_250 0.0906375659 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
5 Hb_127599_010 0.0936943277 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
6 Hb_000862_040 0.0964729819 - - ara4-interacting protein, putative [Ricinus communis]
7 Hb_001862_110 0.1016926278 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
8 Hb_000700_060 0.1018389442 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
9 Hb_000373_100 0.1043817158 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
10 Hb_000059_020 0.1046467623 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
11 Hb_001935_140 0.1048468509 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
12 Hb_029695_020 0.1052341902 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
13 Hb_178051_070 0.1072055432 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
14 Hb_005389_160 0.1093151304 - - PREDICTED: casein kinase I [Jatropha curcas]
15 Hb_000940_200 0.1102126277 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
16 Hb_000236_410 0.1116220872 - - Paramyosin, putative [Ricinus communis]
17 Hb_007894_130 0.1138979327 - - hypothetical protein RCOM_0584960 [Ricinus communis]
18 Hb_000094_320 0.1147863965 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
19 Hb_002119_090 0.1149896587 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
20 Hb_000768_180 0.1157784672 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_170 Hb_000169_170 Hb_007054_040 Hb_007054_040 Hb_000169_170--Hb_007054_040 Hb_000009_330 Hb_000009_330 Hb_000169_170--Hb_000009_330 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_127599_010 Hb_127599_010 Hb_000169_170--Hb_127599_010 Hb_000862_040 Hb_000862_040 Hb_000169_170--Hb_000862_040 Hb_001862_110 Hb_001862_110 Hb_000169_170--Hb_001862_110 Hb_007054_040--Hb_001541_250 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_001935_140 Hb_001935_140 Hb_007054_040--Hb_001935_140 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000009_330--Hb_000862_040 Hb_000236_410 Hb_000236_410 Hb_000009_330--Hb_000236_410 Hb_000009_330--Hb_007054_040 Hb_001541_250--Hb_001862_110 Hb_001541_250--Hb_001935_140 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_000940_200 Hb_000940_200 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000862_040--Hb_000059_020 Hb_000862_040--Hb_001935_140 Hb_005568_040 Hb_005568_040 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_009486_160 Hb_009486_160 Hb_001862_110--Hb_009486_160 Hb_001488_040 Hb_001488_040 Hb_001862_110--Hb_001488_040 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1632 82.3545 28.6071 25.9131 38.24 21.2267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0388 19.1943 15.4389 46.3436 15.0541

CAGE analysis