Hb_000062_080

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig62: 64830-69805
Sequence    

Annotation

kegg
ID rcu:RCOM_1082510
description two-component sensor histidine kinase bacteria, putative
nr
ID XP_012085580.1
description PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
swissprot
ID Q9FXD6
description Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1
trembl
ID A0A067JSA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17890 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51405: 64956-68631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_080 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
2 Hb_001865_060 0.0924008613 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
3 Hb_127599_010 0.0935141085 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
4 Hb_000448_060 0.1035269842 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
5 Hb_000802_190 0.1053304058 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
6 Hb_000010_350 0.1067472084 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
7 Hb_001141_360 0.113622377 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_000976_290 0.1149273979 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
9 Hb_002915_070 0.1197929456 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
10 Hb_003494_060 0.119997884 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
11 Hb_003060_090 0.1255860733 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
12 Hb_004108_170 0.1266219827 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005496_180 0.1277448146 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
14 Hb_004032_310 0.1301492031 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
15 Hb_125126_010 0.1303438777 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
16 Hb_000123_350 0.1304036566 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
17 Hb_000805_230 0.1307748953 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
18 Hb_006111_030 0.1341211871 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
19 Hb_002897_050 0.1342481892 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
20 Hb_006738_050 0.1343276722 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_080 Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000062_080--Hb_001865_060 Hb_127599_010 Hb_127599_010 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_001865_060--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_001865_060--Hb_012725_040 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_000448_060--Hb_004032_310 Hb_002915_070 Hb_002915_070 Hb_000448_060--Hb_002915_070 Hb_002154_020 Hb_002154_020 Hb_000448_060--Hb_002154_020 Hb_000448_060--Hb_001865_060 Hb_000805_230 Hb_000805_230 Hb_000448_060--Hb_000805_230 Hb_002477_120 Hb_002477_120 Hb_000802_190--Hb_002477_120 Hb_000802_190--Hb_127599_010 Hb_000866_090 Hb_000866_090 Hb_000802_190--Hb_000866_090 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_003125_020 Hb_003125_020 Hb_000802_190--Hb_003125_020 Hb_000010_350--Hb_001865_060 Hb_000866_370 Hb_000866_370 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040 Hb_001141_360--Hb_003494_060 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.23521 24.0403 5.08396 4.5051 3.10352 4.66955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16062 2.62774 3.24243 6.26617 2.45389

CAGE analysis