Hb_000802_190

Information

Type -
Description -
Location Contig802: 224115-229831
Sequence    

Annotation

kegg
ID rcu:RCOM_0631490
description (S)-2-hydroxy-acid oxidase, putative (EC:1.1.3.15)
nr
ID XP_012072124.1
description PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
swissprot
ID Q9LRR9
description Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Arabidopsis thaliana GN=GLO1 PE=1 SV=1
trembl
ID A0A067L0G9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04633 PE=4 SV=1
Gene Ontology
ID GO:0010181
description aldolase-type tim barrel family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58847: 224192-229834 , PASA_asmbl_58848: 228941-229274
cDNA
(Sanger)
(ID:Location)		 001_G19.ab1: 224295-228274 , 003_B09.ab1: 224274-228068 , 034_G04.ab1: 224196-228037 , 050_J04.ab1: 224196-227738 , 053_P24.ab1: 224295-228067

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_190 0.0 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
2 Hb_000062_080 0.1053304058 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
3 Hb_002477_120 0.1054981339 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
4 Hb_127599_010 0.1097485387 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
5 Hb_000866_090 0.1100570177 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
6 Hb_004195_120 0.1134696586 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_003125_020 0.1189669416 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
8 Hb_000448_060 0.1209757369 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
9 Hb_004319_070 0.1224062444 - - hypothetical protein RCOM_0852460 [Ricinus communis]
10 Hb_002897_050 0.1226188112 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
11 Hb_003226_110 0.1233454437 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
12 Hb_052764_030 0.1240290572 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
13 Hb_001427_150 0.12542374 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
14 Hb_000622_280 0.1256487384 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
15 Hb_011249_060 0.1271450809 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
16 Hb_001699_150 0.1275056008 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
17 Hb_002301_170 0.128363448 - - MAC/Perforin domain-containing protein [Theobroma cacao]
18 Hb_001080_140 0.1285128837 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
19 Hb_005765_040 0.129483814 - - transcription elongation factor s-II, putative [Ricinus communis]
20 Hb_001488_040 0.129762859 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]

Gene co-expression network

sample Hb_000802_190 Hb_000802_190 Hb_000062_080 Hb_000062_080 Hb_000802_190--Hb_000062_080 Hb_002477_120 Hb_002477_120 Hb_000802_190--Hb_002477_120 Hb_127599_010 Hb_127599_010 Hb_000802_190--Hb_127599_010 Hb_000866_090 Hb_000866_090 Hb_000802_190--Hb_000866_090 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_003125_020 Hb_003125_020 Hb_000802_190--Hb_003125_020 Hb_001865_060 Hb_001865_060 Hb_000062_080--Hb_001865_060 Hb_000062_080--Hb_127599_010 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_007007_080 Hb_007007_080 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_001080_140 Hb_001080_140 Hb_000866_090--Hb_001080_140 Hb_000866_090--Hb_002471_140 Hb_000866_090--Hb_008667_060 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_002942_110 Hb_002942_110 Hb_004195_120--Hb_002942_110 Hb_000227_310 Hb_000227_310 Hb_004195_120--Hb_000227_310 Hb_005649_090 Hb_005649_090 Hb_004195_120--Hb_005649_090 Hb_003226_110 Hb_003226_110 Hb_004195_120--Hb_003226_110 Hb_004310_040 Hb_004310_040 Hb_004195_120--Hb_004310_040 Hb_004319_070 Hb_004319_070 Hb_004195_120--Hb_004319_070 Hb_003125_020--Hb_000062_080 Hb_011930_070 Hb_011930_070 Hb_003125_020--Hb_011930_070 Hb_052764_030 Hb_052764_030 Hb_003125_020--Hb_052764_030 Hb_003125_020--Hb_000866_090 Hb_003125_020--Hb_127599_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7808 86.9308 34.708 16.4551 12.2673 18.7534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7572 9.79906 10.7314 40.1877 13.681

CAGE analysis