Hb_007007_080

Information

Type -
Description -
Location Contig7007: 47623-50643
Sequence    

Annotation

kegg
ID rcu:RCOM_1613040
description hypothetical protein
nr
ID XP_002511774.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5FVB0
description Ataxin-10 OS=Xenopus tropicalis GN=atxn10 PE=2 SV=1
trembl
ID B9RDI5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613040 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arm repeat superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54831: 46720-46939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000069_330 0.1023660302 - - protein with unknown function [Ricinus communis]
3 Hb_003224_030 0.1043963458 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
4 Hb_003752_120 0.1082681796 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
5 Hb_002477_120 0.1096980532 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
6 Hb_005496_160 0.110954935 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
7 Hb_002154_020 0.113455003 - - protein with unknown function [Ricinus communis]
8 Hb_012787_040 0.1136403912 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
9 Hb_000272_110 0.1142096404 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
10 Hb_004032_310 0.1145013012 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
11 Hb_000084_240 0.1154420059 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
12 Hb_000186_200 0.1162281148 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_011360_090 0.1206499304 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
14 Hb_000045_260 0.1217103086 - - protein with unknown function [Ricinus communis]
15 Hb_000803_060 0.123006521 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
16 Hb_000038_040 0.1240217275 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
17 Hb_006846_020 0.1244369601 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
18 Hb_000163_230 0.1281813595 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
19 Hb_002701_210 0.1293267041 - - Protein COBRA precursor, putative [Ricinus communis]
20 Hb_001009_090 0.1299561021 - - CDK protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_007007_080 Hb_007007_080 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_002477_120 Hb_002477_120 Hb_007007_080--Hb_002477_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_002154_020 Hb_002154_020 Hb_007007_080--Hb_002154_020 Hb_003077_050 Hb_003077_050 Hb_000069_330--Hb_003077_050 Hb_000009_200 Hb_000009_200 Hb_000069_330--Hb_000009_200 Hb_001898_130 Hb_001898_130 Hb_000069_330--Hb_001898_130 Hb_004117_170 Hb_004117_170 Hb_000069_330--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000069_330--Hb_005714_100 Hb_000084_240 Hb_000084_240 Hb_003224_030--Hb_000084_240 Hb_002701_210 Hb_002701_210 Hb_003224_030--Hb_002701_210 Hb_005499_010 Hb_005499_010 Hb_003224_030--Hb_005499_010 Hb_000186_200 Hb_000186_200 Hb_003224_030--Hb_000186_200 Hb_000069_730 Hb_000069_730 Hb_003224_030--Hb_000069_730 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_003752_120--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_003752_120--Hb_001662_170 Hb_002915_070 Hb_002915_070 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002477_120--Hb_002154_020 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140 Hb_000649_300 Hb_000649_300 Hb_005496_160--Hb_000649_300 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_001053_200 Hb_001053_200 Hb_005496_160--Hb_001053_200 Hb_001951_240 Hb_001951_240 Hb_005496_160--Hb_001951_240 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80779 39.234 17.0419 11.5301 2.38672 3.47275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53097 3.79477 5.06976 7.81673 4.85018

CAGE analysis