Hb_000009_200

Information

Type -
Description -
Location Contig9: 188034-190218
Sequence    

Annotation

kegg
ID rcu:RCOM_0553130
description AT14A, putative
nr
ID XP_012079091.1
description PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
swissprot
ID Q56XQ0
description UPF0496 protein At2g18630 OS=Arabidopsis thaliana GN=At2g18630 PE=2 SV=3
trembl
ID A0A067KJ06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12270 PE=4 SV=1
Gene Ontology
ID GO:0005634
description upf0496 protein at4g34320-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61850: 188086-190190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_200 0.0 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
2 Hb_005714_100 0.0735998574 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
3 Hb_008112_010 0.0959793069 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
4 Hb_001246_160 0.0990434227 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_000069_330 0.0992617136 - - protein with unknown function [Ricinus communis]
6 Hb_000035_050 0.104755675 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
7 Hb_056196_060 0.1057029575 - - hexokinase [Manihot esculenta]
8 Hb_001329_080 0.1075823822 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
9 Hb_000805_040 0.1113954734 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_001898_130 0.113242227 - - ATP binding protein, putative [Ricinus communis]
11 Hb_018790_050 0.1155497659 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
12 Hb_001102_090 0.1172066444 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
13 Hb_003581_280 0.1187584312 - - KINASE 2B family protein [Populus trichocarpa]
14 Hb_002122_030 0.1204439356 - - -
15 Hb_002875_070 0.1258204087 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_001294_050 0.1307824185 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
17 Hb_005332_140 0.1310323128 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
18 Hb_000749_070 0.1315099021 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
19 Hb_004117_170 0.1328937876 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
20 Hb_001085_300 0.1337719346 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000009_200 Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000035_050 Hb_000035_050 Hb_000009_200--Hb_000035_050 Hb_056196_060 Hb_056196_060 Hb_000009_200--Hb_056196_060 Hb_005714_100--Hb_000035_050 Hb_005714_100--Hb_008112_010 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_005714_100--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_008112_010--Hb_056196_060 Hb_008112_010--Hb_000035_050 Hb_001085_300 Hb_001085_300 Hb_008112_010--Hb_001085_300 Hb_000735_140 Hb_000735_140 Hb_008112_010--Hb_000735_140 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_001246_160--Hb_056196_060 Hb_003077_050 Hb_003077_050 Hb_000069_330--Hb_003077_050 Hb_007007_080 Hb_007007_080 Hb_000069_330--Hb_007007_080 Hb_001898_130 Hb_001898_130 Hb_000069_330--Hb_001898_130 Hb_004117_170 Hb_004117_170 Hb_000069_330--Hb_004117_170 Hb_000069_330--Hb_005714_100 Hb_000035_050--Hb_004117_170 Hb_013358_020 Hb_013358_020 Hb_000035_050--Hb_013358_020 Hb_000035_050--Hb_018790_050 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_056196_060--Hb_018790_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4603 118.988 81.1342 78.7898 8.99515 11.3393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9604 9.91097 14.3834 17.1849 26.4836

CAGE analysis