Hb_002875_070

Information

Type -
Description -
Location Contig2875: 77922-79283
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09780g
description POPTRDRAFT_572434; AAA-type ATPase family protein
nr
ID XP_012083138.1
description PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID B9I917
description AAA-type ATPase family protein OS=Populus trichocarpa GN=POPTR_0014s09780g PE=4 SV=1
Gene Ontology
ID GO:0005524
description aaa-type atpase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30018: 77797-79519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002875_070 0.0 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
2 Hb_005714_100 0.1040811712 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
3 Hb_000035_050 0.1172273852 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
4 Hb_002759_260 0.1176937274 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
5 Hb_003849_190 0.1209362625 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
6 Hb_001133_010 0.1252373271 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_200 0.1258204087 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
8 Hb_001472_140 0.1288390893 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
9 Hb_000336_190 0.1373147057 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
10 Hb_000056_080 0.1373464184 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
11 Hb_000069_330 0.1386839203 - - protein with unknown function [Ricinus communis]
12 Hb_004117_170 0.1403373266 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
13 Hb_000103_420 0.1404302325 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
14 Hb_002450_030 0.1405513763 - - ATPP2-A13, putative [Ricinus communis]
15 Hb_084849_010 0.1407128477 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000200_170 0.1409154004 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
17 Hb_004724_330 0.1416058919 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
18 Hb_000836_600 0.1461694764 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
19 Hb_013358_020 0.1472270742 - - ccr4-associated factor, putative [Ricinus communis]
20 Hb_008248_020 0.1478589069 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002875_070 Hb_002875_070 Hb_005714_100 Hb_005714_100 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200 Hb_005714_100--Hb_000009_200 Hb_005714_100--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_005714_100--Hb_008112_010 Hb_056196_060 Hb_056196_060 Hb_005714_100--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_004117_170 Hb_004117_170 Hb_000035_050--Hb_004117_170 Hb_013358_020 Hb_013358_020 Hb_000035_050--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_000035_050--Hb_018790_050 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010 Hb_023344_110 Hb_023344_110 Hb_002759_260--Hb_023344_110 Hb_002759_260--Hb_003849_190 Hb_002450_030 Hb_002450_030 Hb_002759_260--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_002759_260--Hb_000042_330 Hb_001511_190 Hb_001511_190 Hb_002759_260--Hb_001511_190 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_000836_600 Hb_000836_600 Hb_001133_010--Hb_000836_600 Hb_006054_030 Hb_006054_030 Hb_001133_010--Hb_006054_030 Hb_000200_170 Hb_000200_170 Hb_001133_010--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_001133_010--Hb_143766_030 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000009_200--Hb_000035_050 Hb_000009_200--Hb_056196_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04404 30.2949 12.675 27.5788 2.23428 3.16587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59764 4.23156 5.50217 3.16325 5.32316

CAGE analysis