Hb_008248_020

Information

Type transcription factor
Description TF Family: DBB
Location Contig8248: 7910-9322
Sequence    

Annotation

kegg
ID rcu:RCOM_0025300
description zinc finger protein, putative
nr
ID XP_002533687.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FHH8
description Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2
trembl
ID B9T618
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0025300 PE=4 SV=1
Gene Ontology
ID GO:0003700
description constans-like 7 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59688: 7870-9298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008248_020 0.0 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
2 Hb_003849_190 0.0975716005 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
3 Hb_023344_110 0.1170228264 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
4 Hb_005714_100 0.1174654984 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
5 Hb_000035_050 0.1361692074 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
6 Hb_001133_010 0.1366990682 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009862_020 0.1390552341 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
8 Hb_000836_600 0.1417672545 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
9 Hb_004218_120 0.142246708 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
10 Hb_000735_140 0.144567161 - - 3-glucanase family protein [Populus trichocarpa]
11 Hb_002849_070 0.1446106604 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
12 Hb_000009_200 0.1456509053 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
13 Hb_008112_010 0.1460792456 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
14 Hb_007164_030 0.1469511489 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
15 Hb_002875_070 0.1478589069 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
16 Hb_000200_170 0.1481064397 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
17 Hb_001500_030 0.1481797425 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
18 Hb_002876_210 0.1485768952 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
19 Hb_143766_030 0.1504063391 - - protein with unknown function [Ricinus communis]
20 Hb_000923_100 0.1505067466 - - chloride channel clc, putative [Ricinus communis]

Gene co-expression network

sample Hb_008248_020 Hb_008248_020 Hb_003849_190 Hb_003849_190 Hb_008248_020--Hb_003849_190 Hb_023344_110 Hb_023344_110 Hb_008248_020--Hb_023344_110 Hb_005714_100 Hb_005714_100 Hb_008248_020--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_008248_020--Hb_000035_050 Hb_001133_010 Hb_001133_010 Hb_008248_020--Hb_001133_010 Hb_009862_020 Hb_009862_020 Hb_008248_020--Hb_009862_020 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_002046_060 Hb_002046_060 Hb_023344_110--Hb_002046_060 Hb_002217_090 Hb_002217_090 Hb_023344_110--Hb_002217_090 Hb_000912_100 Hb_000912_100 Hb_023344_110--Hb_000912_100 Hb_143766_030 Hb_143766_030 Hb_023344_110--Hb_143766_030 Hb_001500_030 Hb_001500_030 Hb_023344_110--Hb_001500_030 Hb_000009_200 Hb_000009_200 Hb_005714_100--Hb_000009_200 Hb_005714_100--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_005714_100--Hb_008112_010 Hb_005714_100--Hb_002875_070 Hb_056196_060 Hb_056196_060 Hb_005714_100--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_004117_170 Hb_004117_170 Hb_000035_050--Hb_004117_170 Hb_013358_020 Hb_013358_020 Hb_000035_050--Hb_013358_020 Hb_018790_050 Hb_018790_050 Hb_000035_050--Hb_018790_050 Hb_000035_050--Hb_056196_060 Hb_000035_050--Hb_001376_010 Hb_000836_600 Hb_000836_600 Hb_001133_010--Hb_000836_600 Hb_006054_030 Hb_006054_030 Hb_001133_010--Hb_006054_030 Hb_000200_170 Hb_000200_170 Hb_001133_010--Hb_000200_170 Hb_001133_010--Hb_143766_030 Hb_001133_010--Hb_002875_070 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780 Hb_000028_430 Hb_000028_430 Hb_009862_020--Hb_000028_430 Hb_000923_100 Hb_000923_100 Hb_009862_020--Hb_000923_100 Hb_005162_140 Hb_005162_140 Hb_009862_020--Hb_005162_140 Hb_009862_020--Hb_003849_190 Hb_005305_120 Hb_005305_120 Hb_009862_020--Hb_005305_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2782 68.8678 38.6724 65.4861 5.39804 5.29972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6706 8.74059 9.65392 10.0208 31.7616

CAGE analysis